Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1218 ATGTCAAGGGCTTCCTTTGGGCTGCTGCTGCTTCTCCTTCTTGGTTTTCTCATTATTTCATCATCTGCAACTTCAGATTCAATATATGAAAACTTTGTTCAGTGCCTATCAAAATATTCATCCCCATTTGACCAAGCTTCATCAATAGTCTATGCCCAAACAAATTCTTCATTCACAAATGCTCTTCAATCTTATATCCGAAACCAGCGATTCAACGCATTTTCCACGCCAAAACCCTTGATCATTGTCACCCCCTCGGATGAATCCCAAGTCCAGGCTGCCATAATTTGCTCTAGACGCATTGGAATACAGCTGAGAATCCGAAGCGGTGGCCACGACTACGATGGCCTATCTTATGTCTCTGATGTCCCATTTTTCATCCTCGATATGTTCAATCTTCGGTCCGTCAACGTGAATATCACTGATGAAACTGCTTGGGTTCAAGCGGGTGCAACCCTAGGAGAACTCTACTATAAAATTTGGGAGAAAAGCAGAGTACATGGATTTCCAGCCGGGGTTTGCCCTACTGTTGGTGTCGGTGGGCACTTGAGTGGTGGAGGCTACGGAAATATGTTGCGAAGATATGGACTCTCTATTGATCATATTGTGGATGCCCAGATAGTCAATGTTAATGGCTACATTCTCGATCGAAAATCCATGGGAGAAGACCTCTTTTGGGCCATTAGAGGAGGTGGTGGAGCTAGCTTTGGAGTCATATTGTCATATAAGGTCAAGCTTGTCCGAGTTCCTGAAATTGTTACAGTTTTTCGGGTCGAGAAGACCTTGGCCCAAAACGCCACTGACATAGTCTATCAATGGCAGCACATCACTGACAAGATCGATAATGATCTTTTCACGAGGCTTCTCCTCCAACCTATCACGGTTATTGTTGTTCATTTGGAAACAATAAATTTACATTATCTATTAATTCAAATGCTGTAG 942 0.4321 MSRASFGLLLLLLLGFLIISSSATSDSIYENFVQCLSKYSSPFDQASSIVYAQTNSSFTNALQSYIRNQRFNAFSTPKPLIIVTPSDESQVQAAIICSRRIGIQLRIRSGGHDYDGLSYVSDVPFFILDMFNLRSVNVNITDETAWVQAGATLGELYYKIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMLRRYGLSIDHIVDAQIVNVNGYILDRKSMGEDLFWAIRGGGGASFGVILSYKVKLVRVPEIVTVFRVEKTLAQNATDIVYQWQHITDKIDNDLFTRLLLQPITVIVVHLETINLHYLLIQML* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1218 313 Gene3D - 252 291 - -
Vvi3g1218 313 SUPERFAMILY FAD-binding/transporter-associated domain-like 27 250 IPR036318 GO:0050660
Vvi3g1218 313 Gene3D - 138 251 IPR016169 -
Vvi3g1218 313 FunFam Berberine bridge enzyme-like 15 27 133 - -
Vvi3g1218 313 Gene3D - 27 133 IPR016167 -
Vvi3g1218 313 ProSiteProfiles PCMH-type FAD-binding domain profile. 75 249 IPR016166 GO:0071949
Vvi3g1218 313 PANTHER OS08G0158400 PROTEIN 25 292 - -
Vvi3g1218 313 Pfam FAD binding domain 79 215 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1218 Vvi-Chr3 17473119 17476732 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1218 20 294 Miscellaneous Gene Families AT1G01980 58.719 2.42e-109 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1218 - - vvi:100246147 565.844