Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1215 ATGGAGATGTCAAGGTCTTCCTTTCGTCTGCTACTTCTTGGTTTTCTTCTTGTTTCATCATATGCAGCTTCAGATTCAGTATATGATACCTTTGTTCAATGCCTATCAAACCATTCAGCCCCATCTCACCAAGCTTCATCAATAGTCTACGCCCAAACAAATTCTTCATTCACTAATGTGCTTCGATCTTATATCCGAAACGAACGGTTCAACACATCTTCCACGCCCAAACCCTTGATCATTGTCACCCCCTCGGATGAATCCCAAGTCCAGGCGGCCATAATTTGCTCTAGAGACATTGGCATACTGCTAAAAATCCGAAGTGGTGGCCACGACTACGATGGCCTATCTTATGTCTCTGATATCCCATTTTTCATCCTTGATATGTTCAATCTTCGGTCCATCAACGTGAATATCACTGATGAAACTGCTTGGGTTCAAGCGGGTGCAACCCTAGGAGAACTCTACTATAGAATTTGGGAGAAAAGCAGTGTCCATGGATTTCCAGCTGGGGTTTGCCCCACTCTGGGTGTAGGCGGGCACTTGAGTGGTGGAGGCTATGCATTCTCGATCGAAAGTCCATGGGAGAAGACCTCTTTTGGGCCATCAGAGGAGGTGGCGGAGCTAGCTTTGGAGTCATATTGTCATATAAGGTCAAGCTTGTCCGAGTGCCCGAAATTGTTACAGTTTTTCGGGTCGAGAAGACCCTGGCCCAAAACGCCACTGACCTAG 732 0.4658 MEMSRSSFRLLLLGFLLVSSYAASDSVYDTFVQCLSNHSAPSHQASSIVYAQTNSSFTNVLRSYIRNERFNTSSTPKPLIIVTPSDESQVQAAIICSRDIGILLKIRSGGHDYDGLSYVSDIPFFILDMFNLRSINVNITDETAWVQAGATLGELYYRIWEKSSVHGFPAGVCPTLGVGGHLSGGGYAFSIESPWEKTSFGPSEEVAELALESYCHIRSSLSECPKLLQFFGSRRPWPKTPLT* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1215 243 Pfam FAD binding domain 78 190 IPR006094 GO:0050660
Vvi3g1215 243 Gene3D - 136 190 IPR016169 -
Vvi3g1215 243 FunFam Berberine bridge enzyme-like 15 26 132 - -
Vvi3g1215 243 Gene3D - 26 132 IPR016167 -
Vvi3g1215 243 PANTHER OS08G0158400 PROTEIN 24 188 - -
Vvi3g1215 243 SUPERFAMILY FAD-binding/transporter-associated domain-like 23 188 IPR036318 GO:0050660
Vvi3g1215 243 ProSiteProfiles PCMH-type FAD-binding domain profile. 74 243 IPR016166 GO:0071949
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1215 Vvi-Chr3 17451609 17452413 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1215 26 176 Miscellaneous Gene Families AT1G01980 53.503 6.16e-56 185
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1215 - - vvi:100264985 340.502