Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1213 ATGGAGAATAGACTAATCCTTCTCTATTTTCTTTCAACCAAAACTGATCCAAAAACCTCATTAGCATTAATAAAAATCAAAATTCATGGATTTTCATTCCATGTAAAAACAAGTGAATATGAGGTTGTCATCTTGAGGTCCACAACTTTATCACTGGACCAATACAAACGCGAGTGCCTATCAAAACATTCATCCCCATTTGACCAAGCTTCATCAATAGTCTATGCCCAAACAAATTCTTCATTCACAAATGTTCTTCAATCTTATATCCGAAACCAGCGATTCAACGCATTTTCCACGCCAAAACCCTTGATCATTGTCACCCCCTCCGATGAATCCCAAGTCCAGGCTGCCATAATTTGCTCTAGAGACATTGGAATACAGTTGAGAATTCGAAGCGGTGGCCACGACTACGATGGCCTATCTTATGTCTCTGATGTCCCATTTTTCATCCTTGATATGTTCAATCTTCGGTCCATCAACGTGAATATCACTGATGAAACTGCTTGGGTTCAAGCGGGTGCAACCCTAGGAGAACTCTACTACAAAATTTGGGAGAAAAGCAGAGTACATGGATTTCCAGCCGGGGTTTGCCCTACTGTTGGTGTCGGTGGGCACTTGAGTGGTGGAGGCTATGGAAATATGTTGCGAAGATATGGACTCTCTATTGATCATATTGTGGATGCCCAGATAGTCAATGTTAATGGCTACATTCTCGATCGAAAATCCATGGGAGAAGACCTCTTTTGGGCCATTAGAGGAGGTGGTGGAGCTAGCTTTGGAGTCATATTGTCATATAAGGTCAAGCTTGTCCGAGTTCCTGAAATTGTTACAGTTTTTCGGGTCGAGAAGACCCTGGCCCAAAACGCCACTGACATAGTCTATCAATGGCAGCACATCACTGACAAGATCGATAATGATCTTTTCACGAGGCTTCTCCTCCAACCTATCACGGTGAAGAGCGACAATGGATCCGCCAAGACTGTTAGGGTAACCTTCATATCACTGTTTCTTGGAGACTCGACCCGTCTCATTTCAGTGATGAACAAGGATTTCCCAGAATTAGGGTTAAAGAAAGAGGACTGCATGGAAATGAGCTGGATTGAATCAGTCCTCTACTGGGCTAATTTCGATAATGGAACATCGGTGGATGTGCTGCTTAACCGGACTTCAGACTCAGTGAACTTCTTAAAGAGGAAGTCAGACTACGTACAGAAACCCATATCCAGAGATGATCTAGAAGGGCTGTGGAAGAAGATTATTGAATTAGGCAAACCAGGGATGGTGTTCAATTCATACGGAGGGCGAATGAGTGAAATCCCCGCATCTGAAACGCCCTTCCCACATCGCGCTGGGAACATATTCAAGATCCAGTATTCAGTGAGTTGGCATGACGAAGGGGCTGAGGCAGACAAGGAGCACATGAACTTGATAAGAGAGCTTTATAGCTACATGACCCCACTTGTGTCCAAGACCCCTAGAGGTGCATATCTCAATTATAGAGATGTTGACATTGGTATTAGCCACAATGGTAAAGATAGCTACCAAGAAGGTAAGGTATATGGGGTCCAGTACTTTATGAACAATTTTGACAGGTTGGTGAAAGTGAAGACTGCTGTGGACCCTCAGAATTTTTTCAGGGTTCTTGCCCTTGTTTGA 1659 0.4352 MENRLILLYFLSTKTDPKTSLALIKIKIHGFSFHVKTSEYEVVILRSTTLSLDQYKRECLSKHSSPFDQASSIVYAQTNSSFTNVLQSYIRNQRFNAFSTPKPLIIVTPSDESQVQAAIICSRDIGIQLRIRSGGHDYDGLSYVSDVPFFILDMFNLRSINVNITDETAWVQAGATLGELYYKIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMLRRYGLSIDHIVDAQIVNVNGYILDRKSMGEDLFWAIRGGGGASFGVILSYKVKLVRVPEIVTVFRVEKTLAQNATDIVYQWQHITDKIDNDLFTRLLLQPITVKSDNGSAKTVRVTFISLFLGDSTRLISVMNKDFPELGLKKEDCMEMSWIESVLYWANFDNGTSVDVLLNRTSDSVNFLKRKSDYVQKPISRDDLEGLWKKIIELGKPGMVFNSYGGRMSEIPASETPFPHRAGNIFKIQYSVSWHDEGAEADKEHMNLIRELYSYMTPLVSKTPRGAYLNYRDVDIGISHNGKDSYQEGKVYGVQYFMNNFDRLVKVKTAVDPQNFFRVLALV* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1213 552 ProSiteProfiles PCMH-type FAD-binding domain profile. 99 273 IPR016166 GO:0071949
Vvi3g1213 552 Gene3D - 161 547 IPR016169 -
Vvi3g1213 552 Gene3D - 276 492 - -
Vvi3g1213 552 Pfam Berberine and berberine like 496 547 IPR012951 GO:0016491|GO:0050660
Vvi3g1213 552 PANTHER OS08G0158400 PROTEIN 56 547 - -
Vvi3g1213 552 FunFam Berberine bridge enzyme-like 15 51 157 - -
Vvi3g1213 552 Gene3D - 53 157 IPR016167 -
Vvi3g1213 552 Pfam FAD binding domain 103 239 IPR006094 GO:0050660
Vvi3g1213 552 SUPERFAMILY FAD-binding/transporter-associated domain-like 71 274 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1213 Vvi-Chr3 17437511 17440015 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1213 58 547 Miscellaneous Gene Families AT1G01980 57.631 0.0 585
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1213 - - vvi:100249571 980.704