Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1206 ATGGCAAAACTGCTTAACAACATAGGCTTTTTCATCACTTTTGTCAACACTGAGCACAGCCACAAGCGTTTGCTCAGGTCTAGAGGCCCCAACTCTCTTGATGGCTTCCCTGATTTTCGCTTTGAGTCTATCCCAGATGGCCTCCCACCAAGTGATGCTGATGTCACCCAACGCACCGCTTCAGTCTGTGAATCCACCTCCAAGAACAGCTTGGCTCCCTTTTGCAGCCTCATCTCTAAGCTGAATGATCCTTCCTCCTCTTGCTCGCCTGTCAGCTGTATTGTGTCCGATGGCGTCATGTCCTTCACTCTTGATGCTGCTGAGAAGTTTGGAGTGCCTGAAGTGGTGTTTTGGACAACAAGTGCATGTGGATTTCTGGGGTATAGGCAGTACAGGGACCTCCTTCAAAGAGGTCTTATACCACTCAAAGATGAAAGCTGTCTGACCAATGGGTACTTAGACACCATTGTTGACTCCACTCCTGGAATAATGAAAACCATCCGTCTGAGGGATTTTCCAGCTATCTTCAGAACTACAGACCCGAACGATATCATGCTCAACTTCATCATGGTGGAGGCAGAGAGAGCTAGTAAAGCTTCTGCCATCATTTTGAACACATTCGATGCATTGGAAAAAGATGTTTTGGATGCTCTCAGAGCCAATCTTCCTCCAGTTTACACCATCGGCCCTCTTCAGCATTTGGTTCATCAGATTTCAGACGATGGGCTGACAAATTTAGGCTCAAGTTTATGGAAAGAACAACCTGAATGTCTCCAATGGCTCGATTCCAAAGAACCCAACTCAGTAGTGTACGTGAATTTTGGGAGCATGATTGTGATGACACCTCAACATCTGACAGAGTTAGCTTGGGGACTAGCTAATAGCAACAAGCCCTTCCTATGGATCATAAGGCCTGATTTGGTGGCAGGGGACTCAGCGCCTTTGCCACCAGAGTTTATAACTGAAACAAGAGATAGAGGCATGTTAGCAAGCTGGTTTCCGCAAGAACAAGTCCTGAAGCACCCGGCCGTAGGAGGGTTTGTAACACATTGTGGTTGGAACTCCACAAGCGAAAGCATATGTGGAGGAAGAGACAAGGTGGAAAAGCTTGTGAGAGAGCTGATGGATGGAGAGAAGGGTAAGAAGATGAAGAAGAAGGCCATGGAATGGAAGAAGTTGGCAGAAGAGGCCATTATGCTTGGTGGGTCTTCTTACAACAACTTCAACAAACTGTTGAGTGATGTGCTGTTGTCAAAGAAGTAG 1263 0.4671 MAKLLNNIGFFITFVNTEHSHKRLLRSRGPNSLDGFPDFRFESIPDGLPPSDADVTQRTASVCESTSKNSLAPFCSLISKLNDPSSSCSPVSCIVSDGVMSFTLDAAEKFGVPEVVFWTTSACGFLGYRQYRDLLQRGLIPLKDESCLTNGYLDTIVDSTPGIMKTIRLRDFPAIFRTTDPNDIMLNFIMVEAERASKASAIILNTFDALEKDVLDALRANLPPVYTIGPLQHLVHQISDDGLTNLGSSLWKEQPECLQWLDSKEPNSVVYVNFGSMIVMTPQHLTELAWGLANSNKPFLWIIRPDLVAGDSAPLPPEFITETRDRGMLASWFPQEQVLKHPAVGGFVTHCGWNSTSESICGGRDKVEKLVRELMDGEKGKKMKKKAMEWKKLAEEAIMLGGSSYNNFNKLLSDVLLSKK* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1206 420 FunFam Glycosyltransferase 1 247 - -
Vvi3g1206 420 Gene3D Glycogen Phosphorylase B; 252 363 - -
Vvi3g1206 420 CDD GT1_Gtf-like 1 376 IPR002213 GO:0008194
Vvi3g1206 420 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 2 363 - -
Vvi3g1206 420 Gene3D Glycogen Phosphorylase B; 398 411 - -
Vvi3g1206 420 Gene3D Glycogen Phosphorylase B; 2 241 - -
Vvi3g1206 420 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 412 - -
Vvi3g1206 420 Gene3D Glycogen Phosphorylase B; 364 397 - -
Vvi3g1206 420 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 201 363 IPR002213 GO:0008194
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1206 Vvi-Chr3 17373374 17375164 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1206 1 419 Glycosyltransferase AT1G22360 57.432 1.21e-176 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1206 - - vvi:100261535 741.88