Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1189 ATGGGTGATCTTCAAGTCATTGGCGGAATAAAAAAGCTCAACAACCAAAATTACAATACTTGGTCAACATGCATGATGTCGTACATGCAAGGCCAAGACTTGTGGGAGGTTGTGAACGGAAGCAAAATTACTCAACCGAAGGTTGAGGATGCGAATGGTATACTGCGAAAATGGAAGATAAAAGCGGGCAAAGCGATGTTTGCTTTGAAGACAATGATCGAAGAAGATGTGCTAGAGCATATTCGAGATGCCAAAACCCCTTACGAAGCTTGGAATACGTTCACCAAGCTGTTCTCAAAGAAGAATGACACAAGGCTCCAACTTCTAGAGAGCGAGTTGTTGTCGGTAGCACAGCATGACTTGACGATCGCTCAGTACTTTCACAAGATGCAGACGTTATGCCGGGAAATTTCCGAGTTGGATCTAGAAGCCCCAATCAGTGAAACCAGGATGAAGAGAATAATCATCCATGGTTTGAGACCAGAATTTGGAGGTTTTGTTGCTGCTATATAG 513 0.4347 MGDLQVIGGIKKLNNQNYNTWSTCMMSYMQGQDLWEVVNGSKITQPKVEDANGILRKWKIKAGKAMFALKTMIEEDVLEHIRDAKTPYEAWNTFTKLFSKKNDTRLQLLESELLSVAQHDLTIAQYFHKMQTLCREISELDLEAPISETRMKRIIIHGLRPEFGGFVAAI* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1189 170 PANTHER - 10 170 - -
Vvi3g1189 170 Pfam Domain of unknown function (DUF4219) 13 39 IPR025314 -
Vvi3g1189 170 Pfam gag-polypeptide of LTR copia-type 58 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1189 Vvi-Chr3 16869839 16870351 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1189 - - cann:124888976 288.5