Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1188 ATGCTGAAGCTAGCAAAACTGCTTCACAACAAAGGCTTTTTCGTCTCTTTTGTCAACACCGAGTACAACCATAAGCGTTTGCTCAGGTCCAGAGGCCCCAACTCTCTTGATGGCCTCTCTGACTTTCGCTTTGAGACCATCCCAGATGGCCTCCCACCAAGTGATGCTGACGCCACCCAAGACATCCCCTCTCTCTGTGTTTCCACCACCAAGAACTGCTTGGCTCCCTTTTGCGCCCTCATCACTAAGCTCAATGATCCTTCCTACTCTCCTGGCCCACCTGTGAGCTGTATTGTGTCTGATGGTGTCATGTCCTTCACTCTTGATGCTGCCGAGAAGTTCGGAGTGCCTGAAGTGGTGTTTTGGACGACAAGCGCATGTGGCTTTCTCGGGTATAGGCACTACAGAAACCTTATTCGAAGAGGCCTCATACCACTCCAAGATGAAAGCTGTTTAAGCAATGGGTACTTAGACACCGTTGTTGACTTCGTTCCTGGAAAGAAGAAAACCATCCGTCTGAGAGACTTTCCAACTTTCCTCAGAACGACAGACCTGAACGATATCATGCTCAACTTCGTGAGGGTGGAGGCAGAGAGAGCTTCCAGAGCTTCTGCTGTCATTTTGAACACTTTCGATGCTTTGGAAAAAGATGTTCTGGATGCTCTCTCAGCCACTCTTCCTCCTGTTTACTCCATCGGTCCTCTTCAGCATTTGGTTGATCAGATTTCAGACGATAGATTGAAATCCATGGGCTCAAATCTATGGAAAGAACAAACAGATTGTCTCCAATGGCTCGACTCCAAAGAACCCAACTCAGTCGTGTACGTGAATTTCGGAAGCATCACAGTGATGACATCCCAACAGCTCACAGAGTTCGCTTGGGGACTAGCTAACAGCAACAAGCCCTTCCTATGGATCATAAGGCCTGATCTGGTGGTGGGTGACTCAGCGCTTCTGCCACCGGAGTTTGTGACGGAAACGAAAGATAGAGGCATGTTAGCAAGCTGGTGCCCGCAAGAGCAAGTGCTGAAGCACCCGGCTATAGGAGGGTTCTTAACACATAGCGGCTGGAACTCCACAAGCGAGAGCATATGTGGGGGAGTGCCACTGATTTGTTGGCCATTCTTCGCCGAGCAACAGACCAACTGTCGCTATAGTTGCAGTGAATGGGGGATAGGGATGGAGATTGATAATAATGTGAAGAGGGTGGAAGTGGAAAAGCTTGTGAGAGAGCTGATGGATGGGGAGAAGGGGAAGGAGATGAAGAAGAAGGTGATGGAATGGAAGAAGTTGGCAGAAGAGGCCACTAGGCCTGGAGGGTCATCGTACGACAACTTCAACAAACTGCTGCGTAATGTGTTGTCAAAGAAGTAG 1374 0.492 MLKLAKLLHNKGFFVSFVNTEYNHKRLLRSRGPNSLDGLSDFRFETIPDGLPPSDADATQDIPSLCVSTTKNCLAPFCALITKLNDPSYSPGPPVSCIVSDGVMSFTLDAAEKFGVPEVVFWTTSACGFLGYRHYRNLIRRGLIPLQDESCLSNGYLDTVVDFVPGKKKTIRLRDFPTFLRTTDLNDIMLNFVRVEAERASRASAVILNTFDALEKDVLDALSATLPPVYSIGPLQHLVDQISDDRLKSMGSNLWKEQTDCLQWLDSKEPNSVVYVNFGSITVMTSQQLTEFAWGLANSNKPFLWIIRPDLVVGDSALLPPEFVTETKDRGMLASWCPQEQVLKHPAIGGFLTHSGWNSTSESICGGVPLICWPFFAEQQTNCRYSCSEWGIGMEIDNNVKRVEVEKLVRELMDGEKGKEMKKKVMEWKKLAEEATRPGGSSYDNFNKLLRNVLSKK* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1188 457 Gene3D Glycogen Phosphorylase B; 256 434 - -
Vvi3g1188 457 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 1 447 - -
Vvi3g1188 457 CDD GT1_Gtf-like 1 414 IPR002213 GO:0008194
Vvi3g1188 457 FunFam Glycosyltransferase 256 434 - -
Vvi3g1188 457 FunFam Glycosyltransferase 1 251 - -
Vvi3g1188 457 Gene3D Glycogen Phosphorylase B; 1 440 - -
Vvi3g1188 457 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 263 427 IPR002213 GO:0008194
Vvi3g1188 457 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 1 449 - -
Vvi3g1188 457 ProSitePatterns UDP-glycosyltransferases signature. 336 379 IPR035595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1188 Vvi-Chr3 16773485 16775172 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1188 1 457 Glycosyltransferase AT1G22380 61.957 0.0 600
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1188 - - vvi:100248624 905.205