Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1187 ATGGGTGATAAGCCTCATGTTGTCTGTATCCCATTTCCAGCTCAAGGCCACATAAAGCCAATGCTGAAACTAGCGAAATTGCTTCACTACAGAGGCTTTCACATAACCTTTGTCAACACTGAGTTCAACCATAAGCGCTTGTTGAGATCAAGAGGCCCTCATGCCCTGGATGGCATGCCTGGCTTCTGCTTTGAATCCATCCCTGATGGTTTACCTCCTGTTGATGCTGATGCCACTCAGCACATCCCTTCTCTCTGTGAATCGACCCCGAAAAGCTGTTTGATCCCATTTCAGCAACTTATTGCCAAGCTCAATGATGCTCCCTCCTCCAATGTCCCACCAGTGACTTGTATCGTTTCTGATGGGTCCATGTGCTTCACTCTCAAAGCATCTGAAGAACTTGGGATTCCAAATGTACTTTTCTGGACTACTAGTGCTTGTGGCTTCATGGCCTACAAGCAGTTTCGCCCTCTTATTGATGGAGTTCTTGTCCCACTAAAAGATTTGAGCTATCTCACAAATGGGTATTTGGAGACCATCATAGACTGGGTTCCAGGAATGAAAAATATGCGCCTGAGAGATTTCCCCAGCTTTATCCGAACCAGAGATCCAAGTGATCACTTTATGTTAGACTTCATCATAGATACAACGGACAGTGCTTCCAAAGCTTCAGGCCTGATTCTCAATACTTTCCATGCCTTGGAGCATGATGTTCTCAACCCTTTATCGTCAATGTTCCCTACAATTTGCACCGTTGGTCCTCTTCCATTGCTTCTCAATCAGATTCCAGATGACAATTCTATTGAATCTAATCTATGGAGGGAAGAGACTGAGTGCCTCCAATGGCTTAATTCAAAGCAACCTAACTCAGTGGTTTATGTGAATTTCGGAAGCATCACAGTCATGACACCTGAACAACTGGTTGAATTCGCTTGGGGGCTGGCTAACAGCCACAAACCCTTTCTGTGGATCATAAGGCCTGATCTAGTCGTGGGTGATTCTGTCATTCTGCCACCAGAGTTTGTCAATGAAACCATACAAAGAGGCCTAATGGCGGGCTGGTGCCCGCAAGAGAAAGTGCTCAACCACCCATCAGTTGGAGGGTTCTTAACGCATAGCGGATGGAATTCAACCATTGAAAGCATTTGCGCTGGTGTTCCCATGATTTGTTGGCCGTTCTTTGCTGAGCAACAGACTAATTGTAGGTATGCTTGCACGGAATGGGGCGTTGGGATGGAGATTGACAACAATGTTGAGAGAGATGAAGTGGAGAAGCTTGTGAAAGAGCTAATGGAAGGAGAGAAAGGCAAGAGTATGAAGAAGGCAGCAATGGAATGGAGGACGAAGGCAGAAGAAGCCACAGCCCCATGTGGTTCCTCATACCTGAATTTGGACAAATTGGTGGACATACTGCTTACAAAACCATAA 1428 0.458 MGDKPHVVCIPFPAQGHIKPMLKLAKLLHYRGFHITFVNTEFNHKRLLRSRGPHALDGMPGFCFESIPDGLPPVDADATQHIPSLCESTPKSCLIPFQQLIAKLNDAPSSNVPPVTCIVSDGSMCFTLKASEELGIPNVLFWTTSACGFMAYKQFRPLIDGVLVPLKDLSYLTNGYLETIIDWVPGMKNMRLRDFPSFIRTRDPSDHFMLDFIIDTTDSASKASGLILNTFHALEHDVLNPLSSMFPTICTVGPLPLLLNQIPDDNSIESNLWREETECLQWLNSKQPNSVVYVNFGSITVMTPEQLVEFAWGLANSHKPFLWIIRPDLVVGDSVILPPEFVNETIQRGLMAGWCPQEKVLNHPSVGGFLTHSGWNSTIESICAGVPMICWPFFAEQQTNCRYACTEWGVGMEIDNNVERDEVEKLVKELMEGEKGKSMKKAAMEWRTKAEEATAPCGSSYLNLDKLVDILLTKP* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1187 475 CDD GT1_Gtf-like 5 456 IPR002213 GO:0008194
Vvi3g1187 475 Gene3D Glycogen Phosphorylase B; 6 458 - -
Vvi3g1187 475 FunFam Glycosyltransferase 6 271 - -
Vvi3g1187 475 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 468 - -
Vvi3g1187 475 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 5 465 - -
Vvi3g1187 475 FunFam Glycosyltransferase 274 452 - -
Vvi3g1187 475 ProSitePatterns UDP-glycosyltransferases signature. 354 397 IPR035595 -
Vvi3g1187 475 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 209 442 IPR002213 GO:0008194
Vvi3g1187 475 Gene3D Glycogen Phosphorylase B; 268 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1187 Vvi-Chr3 16716769 16718607 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1187 3 472 Glycosyltransferase AT1G22380 59.789 0.0 610
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1187 - - vvi:100243488 992.645