Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1186 ATGTTTGAAGTTCTGGGTCATCAATTGCAGTTTTCTCAGGATCCCAATTCGAAGCATTTAGGAACTACGGTTTGGGATGCATCAATGGTATTTGTGAAATTTCTGGAGAGGAATTGCAGAAAGGGAAGGTTTAGCCCATCTAAATTGAAAGGAAAACGTGTTATTGAACTTGGAGCAGGTTGTGGAGTAGCTGGATTTGGCATGGCATTGCTAGGATGTGATGTAGTTTCAACAGATCAAACTGAAGTTTTGCCATTACTAATGAGAAATGTTGAACGTAATACTTCAAGGATCATGCAGATGAATCCTGGTTCAGATTCATTTGGTTCTGTCCAGGTAGCAGAGCTGGACTGGGGAAATGAAGATCATATAAAGGCAGTTAATCCACCATTTGATTTCATTATTGGCACTGATGTTGTAAGTTTACTGGATGAGATTCTTTTTTTGCAAAAAAAAAAAAATGCAGGTTACCATGACTTACTTTCAGTCTCATTTTCTGAAAAGAGTGAATAA 513 0.3782 MFEVLGHQLQFSQDPNSKHLGTTVWDASMVFVKFLERNCRKGRFSPSKLKGKRVIELGAGCGVAGFGMALLGCDVVSTDQTEVLPLLMRNVERNTSRIMQMNPGSDSFGSVQVAELDWGNEDHIKAVNPPFDFIIGTDVVSLLDEILFLQKKKNAGYHDLLSVSFSEKSE* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1186 170 PANTHER HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN 5 140 IPR019410 -
Vvi3g1186 170 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 48 139 IPR029063 -
Vvi3g1186 170 CDD AdoMet_MTases 53 152 - -
Vvi3g1186 170 Gene3D Vaccinia Virus protein VP39 3 150 IPR029063 -
Vvi3g1186 170 Pfam Lysine methyltransferase 7 147 IPR019410 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1186 Vvi-Chr3 16694359 16697045 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1186 K21806 - vvi:100246881 289.656