Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1180 ATGGAGTCTGTGAAGAAGCCTCACGCTGTTTGCCTTCCTCTTCCAGCCCAAGGCCATATGAACCCCATGTTGAAGATAGCAAAGCTTCTTCATTCACAAGGCTTTTATGTCACCTTTGTCCTCACAGAGTTCAACTACCAACTCTTGGTGAAGAGTAGAGGCGCAAATTCTCTCAAGGTGTTCGATGATTTTCGGTTTGAGACCATCTCTGATGGCTTGCCACCAACAAACCAACGAGGCATACTCGATCTTCCGGCCCTTTGTTTGTCCATGCCAGTTTACTCTCTAGTCTCCTTCCGGGAGCTCATACTGAAACTCAAGGCTTCCTCAGATGTTCCTCCTATCACTTGCATAGTATCTGATGGTGTTATGAGCTTCACCTTAGAGGTTGCACAAGAGTTTGGCATCCCTGAGATGCTATTCTTTACTCCCAGTGCTTGTGGCATGTTGGGTTACCTCCATTTTGAGGAGTTAATTCAAAGAGGCTATTTTCCCTTGAAAGATGAGAGCTGCCTAAATAATGGATATCTTGATACTTCTATTGATTGGATACCGGGTTTGAACGGGGTCCGACTGAAAGATCTTCCCACCTTCATTCGAACTACTGATCCCAACGATACAATGTTCAATTACAACTTACTTTCAGTGAATAATGCCTTAAAGGCCAAATCCATAATCCTCAATACATTTGAGGATTTGGAGAAAGAGGTCTTGGACTCCATCAGAACCAAGTTCCCCCCAGTTTACACCATTGGCCCTTTATGGATGCTTCAACAACAACTCTCTGAAGCAAAACTAGACTCTATTGAATTGAATTTGTGGAAGGAAGACACGAGATGCCTGGACTGGTTAGATAAAAGGGAGCGAGGTTCGGTTGTGTATGTGAACTATGGAAGCCTAGTGACGCTGACACCATCCCAGTTGAGTGAGTTCGCATGGGGACTAGCTAATAGCAAGTGCCCATTCTTATGGGTGATTCGATCAAATCTAGTGGTCAGTGAGGCCGAGATTATATCCAAGGACTTCATGGAGGAGATTAGTGGTAGAGGCCTGCTTTCTGGTTGGTGTCCACAAGAGAAAGTTCTTCAGCATCCGGCGATCGGGTGCTTTCTAACGCATTGTGGATGGAACTCTATTCTGGAAAGCATTTGTGAAGGAGTGCCGATGATCTGTTGGCCGTTCTTCGCTGAGCAGCAGACAAACTGCTTCTTCTCGTGCGGTAAATGGGGGCTTGGCGTGGAGATCGACAGCAACGTTAGAAGGGAGAAGGTTGAGGGGCTTGTGAGGGAGTTGATGGGAGGAGAGAAAGGGAAGGAGATGAAGGAAACTGCCATGCAGTGGAAGAAGAGGGCAGAGAAGGCTACAAGGTCTGGTGGGTCTTCTTATGTGAACTTCGATAACTTAGTGAAGCAACTCAAGGGGAAGCCTATAATTGAGACCAATACCATCTCCCCAGAAAATGTTACCTAG 1470 0.4612 MESVKKPHAVCLPLPAQGHMNPMLKIAKLLHSQGFYVTFVLTEFNYQLLVKSRGANSLKVFDDFRFETISDGLPPTNQRGILDLPALCLSMPVYSLVSFRELILKLKASSDVPPITCIVSDGVMSFTLEVAQEFGIPEMLFFTPSACGMLGYLHFEELIQRGYFPLKDESCLNNGYLDTSIDWIPGLNGVRLKDLPTFIRTTDPNDTMFNYNLLSVNNALKAKSIILNTFEDLEKEVLDSIRTKFPPVYTIGPLWMLQQQLSEAKLDSIELNLWKEDTRCLDWLDKRERGSVVYVNYGSLVTLTPSQLSEFAWGLANSKCPFLWVIRSNLVVSEAEIISKDFMEEISGRGLLSGWCPQEKVLQHPAIGCFLTHCGWNSILESICEGVPMICWPFFAEQQTNCFFSCGKWGLGVEIDSNVRREKVEGLVRELMGGEKGKEMKETAMQWKKRAEKATRSGGSSYVNFDNLVKQLKGKPIIETNTISPENVT* 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1180 489 FunFam Glycosyltransferase 8 269 - -
Vvi3g1180 489 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 7 466 - -
Vvi3g1180 489 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 290 438 IPR002213 GO:0008194
Vvi3g1180 489 Gene3D Glycogen Phosphorylase B; 8 459 - -
Vvi3g1180 489 Gene3D Glycogen Phosphorylase B; 275 453 - -
Vvi3g1180 489 FunFam Glycosyltransferase 275 453 - -
Vvi3g1180 489 CDD GT1_Gtf-like 7 451 IPR002213 GO:0008194
Vvi3g1180 489 ProSitePatterns UDP-glycosyltransferases signature. 355 398 IPR035595 -
Vvi3g1180 489 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 6 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1180 Vvi-Chr3 16533806 16536517 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1180 5 475 Glycosyltransferase AT1G22380 54.526 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1180 - - vvi:100260591 1001.89