Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1178 ATGGCCTCCATGTCTGAGAATTTTCTCAAGAAAAGAACAACGACAAAGAGAGTTATTCAATGCAGCAAGTGCTCCAGCAACATTGAAGTCCCACCAACAGCCCAAACTATCCACTGCAGGCAGTGCAACACTTATATTTTGGTTTCCAGAGCTTCCCGGTCGATCAGTGGCAATCCTCTGGTGATGAGTAAGCAAGTTACTAATTCAGGTGCCACCCAACCAAGGTTAAATAAACGGGCACTTCTTTGCGGCGTGAGCTACAGGGGCCTCAAATACAGGCTTAGAGGAACTATTAATGATGTCAACAGGATGCAGCAATTCCTCACTAAGCGCTTCAATTTCCCGAAACAGTCCATTCGTATCCTAACAGAAGATCAGCCAAAAGAAGAAGATACTCCAACAAGAAAGAACATTGAGAATGCCTTAAGATGGCTGGTGGAAGACTGCCAGTCAGGCGACTCACTGGTGTTCTACTTCTCAGGGCATGGCCTTCGACAGCCAGATTTCAACGGGGATGAGAACGATGGATTTGATGAAACCTTATGTCCAGTTGATTTCAGCAAGGAGGGTATGATCCTTGATAATGATATCAATTCCATCATTGTTAAGCCCCTCCCCGCTGGTGTCAAACTTCACGCCATCATTGATGCCTGTCACAGTGGAACCATTCTTGATCTGCACTATATTTACAAAATCAAATCGAACAAATGGGAAGAGGATGTTGCTCCATCAGGTAGACCTCCTAAAGGTACAAGTGGTGGACTAGCTATCTGCTTCAGTGCTTGTGCTGATAGTCAAAGAGCTGTTGATACTTCTATTTTCTCGGAAAAGGGCAAGCATATTTTTGCTCGAAAGGATATGTATGGTGCCATGACTACCTTGTTCATCCGAGCAGTTGAGAGTCACTCCAATATAACATATGTTGGAATACTAGAGTTCATGAATGAAGAGTGTGAAGCCATGAATATACGAGGGAGATGCTTCAACCGTCCAAGCTTAAGGAGAATGTTCAACAGAGGATTACTACAGGAACCTCAATTATCATCCTCCAAGGATTTTGATGTCGATGAGAAATTCGAATTGTGA 1086 0.4374 MASMSENFLKKRTTTKRVIQCSKCSSNIEVPPTAQTIHCRQCNTYILVSRASRSISGNPLVMSKQVTNSGATQPRLNKRALLCGVSYRGLKYRLRGTINDVNRMQQFLTKRFNFPKQSIRILTEDQPKEEDTPTRKNIENALRWLVEDCQSGDSLVFYFSGHGLRQPDFNGDENDGFDETLCPVDFSKEGMILDNDINSIIVKPLPAGVKLHAIIDACHSGTILDLHYIYKIKSNKWEEDVAPSGRPPKGTSGGLAICFSACADSQRAVDTSIFSEKGKHIFARKDMYGAMTTLFIRAVESHSNITYVGILEFMNEECEAMNIRGRCFNRPSLRRMFNRGLLQEPQLSSSKDFDVDEKFEL* 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1178 361 SUPERFAMILY Caspase-like 82 191 IPR029030 -
Vvi3g1178 361 Pfam Caspase domain 78 352 IPR011600 GO:0004197|GO:0006508
Vvi3g1178 361 Gene3D - 7 361 - -
Vvi3g1178 361 PANTHER METACASPASE-4 75 359 - -
Vvi3g1178 361 FunFam Type I metacaspase 32 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1178 Vvi-Chr3 16414993 16420525 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1178 K22684 - vvi:100255633 734.947