Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1177 ATGGAACCACAAGACCTCTCCGATAACCCCACCGCCGCCGTCTCCGGCGAGTCCACCCCCGAAAACCAATCTTCTCCGCCCGAGACCACCCTCGAAGTCCGCGTTTCGGACTCCCAGCTCGATGAAACCTCAGAGCCTCCGCCGAAGAAGCGCCGCCGGCGAAAGAAGCAGTTCCCAGAGATGATATCTTCCGCCGCGGCCGTCACCGGCCTCCGACTCCTCCGCCCCCATCCCAAGTCCAGCATTTACAGCGAGAAGATCATGGACGATATCATCGGAATGCAGATCAACGACTCCCCGGCGCTGTCCAAGACCCACCGCCGCCGCCGACGCATCGCCGATCTCGCCAAGGAGGTCGACGTTGAGGCCCTGGTCGCCATCTCTGTCGGGTTTCCGGTGGACTCTCTTACAGAAGAGGAAATCGAAGCAAATGTGGTGACGGCGATCGGCGGAGCCGAGCAGGCCAACTACATCGTCGTCCGAAACCACATCCTCGCGCGGTGGCGCTGGAGCGTTTCCACATGGCTCACCCGCGACCACGCAATGGAATCGATTCGATCGGAGCATCGAAATTCGGTAAATTCTGCATACTCCTTTTTGCTTGAGCATGGTTACATCAATTTTGGCCTCGCGCCTGCCATTAGAGAGGTGCAACTGAAGCCAAATGATTCGTTGAAAGCTAGTGTAATAATCGTCGGTGCGGGACTAGCTGGATTAGCTGCCGCCCGGCAATTGATCTTTCTAGGGTTTAAGGTTTTGATATTGGAAGGGAGGAGCAGGCCCGGAGGGCGCGTGAGAACAAGAAAGATGAAGAGAATGGATGGTTGCGGAGTGATTGCAGCTGCTGATCTCGGTGGGAGTGTCCTCACTGGGATCAATGGGAACCCGTTAGGGGTTTTGGCGAGGCAATTAGGGTTTCCTCTGCACAAGGTGAGGGATATATGCCCACTTTATTTGCCTGATGGGAGAATGGTGAATTCGGAGATTGATTCGCGGGTGGAGACTTCATTTAACAGGTTGTTGGATAGGGTTTGTAAGCTAAGGCAGGCAATGATGGAGGAGGTTAAGTCCGCGGATGTTTCACTTGGGACTGCGCTTGAGGCCTTTAGGCGTGTTTACAAGGTTGCAGAGGACCCCCAAGAGCGGATGCTGTTGAATTGGCATCTCGCGAATTTAGAGTATGCGAATGCATCGCTGATGTCTGATTTGTCTATGGCATATTGGGATCAGGATGATCCATATGAAATGGGGGGTGACCACTGTTTCATTCCTGGAGGAAATGAGAGGTTTGTGCGGGCACTTGCAGAGGACCTTCCGATTTTTTACAGTCAGACAGTGGAGAGTGTAAGATATGGTGCTGATGGGGTTTCTGTGCATGCTGGTGGGCAGGAGTTTCGGGGGGACATGGTGCTTTGTACAGTGCCATTGGGTGTGCTCAAGAAAGGAACGATAGATTTTCTGCCTCAACTTCCCCAAAGAAAGAGAGATGCAATTCAAAGAATTGGGTTTGGATTACTAAACAAGGTTGCTATGTTGTTTCCATATGATTTTTGGGGTGGAGAAATTGACACGTTTGGGCATTTGACAGAAGAGTCAACGATGAGGGGCGAGTTCTTTCTGTTCTACAGCTATTCTTCTGTATCAGGAGGCCCGCTTCTTGTGGCTCTTGTTGCAGGAGAGGCAGCAATTAATTTCGAAATGATGTCCCCCGTGGAAGCTGTGAGAAGGGTTTTGGACATACTGAAGGGTATTTTCAATCCAAAAGGGATAGCTGTTCCTGATCCAATTCAGGTGGTCTGCACCCGGTGGGGAAAAGATCGCTTCACATATGGTTCTTACTCTTATGTTGCAATTGGTTCATCAGGGGATGATTATGATATCCTGGCAGAGAGTGTAGGAGACGGAAGGGTTTTCTTTGCAGGAGAGGCAACTAATAAACAGTATCCAGCAACAATGCATGGAGCTTTTCTTAGTGGGATGCGAGAGGCTGCAAACATATTGAGAGTGGCTAATCGGCGATCTTTGCTTAGTTAG 2034 0.5128 MEPQDLSDNPTAAVSGESTPENQSSPPETTLEVRVSDSQLDETSEPPPKKRRRRKKQFPEMISSAAAVTGLRLLRPHPKSSIYSEKIMDDIIGMQINDSPALSKTHRRRRRIADLAKEVDVEALVAISVGFPVDSLTEEEIEANVVTAIGGAEQANYIVVRNHILARWRWSVSTWLTRDHAMESIRSEHRNSVNSAYSFLLEHGYINFGLAPAIREVQLKPNDSLKASVIIVGAGLAGLAAARQLIFLGFKVLILEGRSRPGGRVRTRKMKRMDGCGVIAAADLGGSVLTGINGNPLGVLARQLGFPLHKVRDICPLYLPDGRMVNSEIDSRVETSFNRLLDRVCKLRQAMMEEVKSADVSLGTALEAFRRVYKVAEDPQERMLLNWHLANLEYANASLMSDLSMAYWDQDDPYEMGGDHCFIPGGNERFVRALAEDLPIFYSQTVESVRYGADGVSVHAGGQEFRGDMVLCTVPLGVLKKGTIDFLPQLPQRKRDAIQRIGFGLLNKVAMLFPYDFWGGEIDTFGHLTEESTMRGEFFLFYSYSSVSGGPLLVALVAGEAAINFEMMSPVEAVRRVLDILKGIFNPKGIAVPDPIQVVCTRWGKDRFTYGSYSYVAIGSSGDDYDILAESVGDGRVFFAGEATNKQYPATMHGAFLSGMREAANILRVANRRSLLS* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1177 677 MobiDBLite consensus disorder prediction 1 42 - -
Vvi3g1177 677 ProSiteProfiles SWIRM domain profile. 116 217 IPR007526 GO:0005515
Vvi3g1177 677 Gene3D - 314 621 - -
Vvi3g1177 677 Pfam Flavin containing amine oxidoreductase 236 667 IPR002937 GO:0016491
Vvi3g1177 677 MobiDBLite consensus disorder prediction 1 59 - -
Vvi3g1177 677 Pfam SWIRM domain 131 208 IPR007526 GO:0005515
Vvi3g1177 677 FunFam Lysine-specific histone demethylase 1A 121 220 - -
Vvi3g1177 677 SUPERFAMILY FAD/NAD(P)-binding domain 227 668 IPR036188 -
Vvi3g1177 677 Gene3D - 229 665 IPR036188 -
Vvi3g1177 677 SUPERFAMILY Homeodomain-like 119 221 IPR009057 -
Vvi3g1177 677 Gene3D - 122 222 IPR036388 -
Vvi3g1177 677 PANTHER FLAVIN MONOAMINE OXIDASE 228 669 - -
Vvi3g1177 677 SUPERFAMILY FAD-linked reductases, C-terminal domain 502 615 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1177 Vvi-Chr3 16377478 16379511 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-SWI3 Vvi3g1177 Amino_oxidase 9e-97 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1177 - - vvi:100245322 1317.37