Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1176 ATGGAGAGATCTCAGGGTTTGGATTTCAAGGACCTCCCCGAGGCTTCTTCCTCAGATGGTGCACTCTTTGATGCATCACAATATGAATTTTTTGGTCAACATGCTGTGGAGGAAGTGGAGTTGGGGGGTTTGGAGAATGAAGAAAATATTCCTGTATTTGGATCCGTTGACGATGAGTATCAGTTGTTTGAGAGAGAAGAGAGTGTAGGTTTAAGTTCTTTGTCTGACATCGATGATCTGGCAAGTACATTTTCAAAGTTGAACAGAGTTGTTACTGGACCAAGAAATCCAGGAGTTATTGGTGATAGGGGTTCTGGATCTTTTTCAAGAGAAAGTTCGTCTGCAGCTGATTGGGCACAAGACACAGATTTTCCGAACTGGTTGGATCAGCATATGTTTGATGCAGAATGTTCTCAGGAAGGCAAGAGGTGGTCATCACAGCCACATGCTTCTTCTGCTCATCTAGGTGAATCAAGGCCTTTGTACAGAACATCGTCATATCCTCAGCAGCCACAGCAGCCACATCACTTCTCGAGTGAACCAATTTTAGTGCCCAAATCATCTTTCACATCTTTCCCTCCGGGTGGCAGTTCTCAACAGGCTTCACCACGCCACCACCATTCACATCACCTGAATATTTCATCTCTTACTGTCGGACCTCAGTTGCACTTATCTGCGCCAAATCTATCTCCTTTATCTAACTCTAATATCCATTTGTCTGGCTTACCACATGGGTTGCATTACGGTGGAAATATACCTCAGTTCAACCCTCCTGGTCTATCTGTTAATAATAGGCCACTGAACCACTGGGTCAATCATGCTGGCTTAATTCATGGAGATCACCCTAGCCTCTTGAACAATATTCTGCAACAACAATTACCTCATCAAAATGGGATAATGCCCCAACAGTTAATGTCACAACAGCAGCTTCAACAGCAGAGGTTGCATCATTCAGTTCAACCATCCATGGCCCATTTTTCAGCACTGCGATCCCAACTGTATAATACCCATCCTTCACCTCAACATAAAGGAATGCCTGGATTGTCTGATATGAGAGATCAAAGACCCAAGTCAACACAAAGGAGTAAACAAAACATGCGCTTTTCTCACCAAGCCTCTGATTCTAGCAGCCAGAAAAGTGATAATGGTCTGGTGCAATTCAGGTCCAAGTATATGACAGCTGATGAGATAGAGAGTATTCTTAGAATGCAGCATGCTGCCACACATAGCAATGACCCCTACATAGATGATTATTACCACCAAGCACGTCTTGCTAAAAAATCTGCTGAATCAAGGTTGAAACACCATTTCTACCCGTCTCACCTTAAGGATCTTCCTACTCGAGGACGCAATAATACAGAACAGCATTCTCATCTCCCTGTAGATGCTCTTGGGAGGATTGCCTTCTCTTCCATCCGTAGGCCTCGCCCCCTCCTTGAAGTAGACTCTCCTTCCTCTGGCTCTAATGATGGCAGCACTGAACAGAATGTCACTGTAAAGCCACTGGAACAGGAACCAATGCTTGCAGCTAGGATAGCTATTGAGGATGGCCTTTGTCTTCTCCTTGACGTAGATGATATTGATCGGGTTTTACAATTTAGTCCCCCCCAAGATGGAGGGATTCAGCTGAGGCGGAAGCGGCAGATGCTGTTGGAAGGGTTAGCAGCTTCACTTCAGCTTGTTGACCCGCTTGGGAAAAGTGGCCATGCAGTTGGGTTGGCTCCCAATGATGACCTTGTTTTCCTGCGTTTGGTCTCTCTTCCCAAGGGCCGAAAGCTCCTTTTCAGGTACATTCAGCTACTTTTCCCAGGTGGTGAGCTTGCCAGAATTGTCTGCATGGCTATTTTCCGTCATTTGAGGTTTTTATTTGGCGGCCTTCCCTCTGATAAGGGGGCGGCAGAGACAACAATAGATCTCGCAAAGACAGTTTCCACTTGTGTTAATGGCATGGATCTTCGTGCTTTGAGTGCTTGTCTGGTTGCAGTTGTTTGTTCTTCAGAGCAGCCACCCCTCCGCCCTCTTGGAAGCCCTGCTGGAGATGGGGCCTCTATTATCTTAAAATCTGTTCTTGAAAGGGCAACCGAACTCCTAACTGATCCTCATGTTGCTGGCAAATGTAGCATGCCCAACCGTGCTCTTTGGCAGGCTTCTTTTGATGAATTCTTTAGTCTTCTTACCAAGTATTGCCTGAGTAAATATGAGACTATCATACAGTCAATATTTTCACAAACCCAGCCTGGCACAGAAATAATTAGTTCAGAGTCCACAAGAGCAATAAGCCGGGAAATGCCTGTGGAGCTTCTACGTGCAAGTCTTCCTCACACTGATGAGCACCAGCGGAAGCTTTTACTAGATTTTGCTCAGCGATCCATGCCCATCACAGGATTCAATACCCGAGGGAGCAGTGGCCAGGTAACTTCTGAATCAGTGAGGGGTTAA 2439 0.4576 MERSQGLDFKDLPEASSSDGALFDASQYEFFGQHAVEEVELGGLENEENIPVFGSVDDEYQLFEREESVGLSSLSDIDDLASTFSKLNRVVTGPRNPGVIGDRGSGSFSRESSSAADWAQDTDFPNWLDQHMFDAECSQEGKRWSSQPHASSAHLGESRPLYRTSSYPQQPQQPHHFSSEPILVPKSSFTSFPPGGSSQQASPRHHHSHHLNISSLTVGPQLHLSAPNLSPLSNSNIHLSGLPHGLHYGGNIPQFNPPGLSVNNRPLNHWVNHAGLIHGDHPSLLNNILQQQLPHQNGIMPQQLMSQQQLQQQRLHHSVQPSMAHFSALRSQLYNTHPSPQHKGMPGLSDMRDQRPKSTQRSKQNMRFSHQASDSSSQKSDNGLVQFRSKYMTADEIESILRMQHAATHSNDPYIDDYYHQARLAKKSAESRLKHHFYPSHLKDLPTRGRNNTEQHSHLPVDALGRIAFSSIRRPRPLLEVDSPSSGSNDGSTEQNVTVKPLEQEPMLAARIAIEDGLCLLLDVDDIDRVLQFSPPQDGGIQLRRKRQMLLEGLAASLQLVDPLGKSGHAVGLAPNDDLVFLRLVSLPKGRKLLFRYIQLLFPGGELARIVCMAIFRHLRFLFGGLPSDKGAAETTIDLAKTVSTCVNGMDLRALSACLVAVVCSSEQPPLRPLGSPAGDGASIILKSVLERATELLTDPHVAGKCSMPNRALWQASFDEFFSLLTKYCLSKYETIIQSIFSQTQPGTEIISSESTRAISREMPVELLRASLPHTDEHQRKLLLDFAQRSMPITGFNTRGSSGQVTSESVRG* 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1176 812 MobiDBLite consensus disorder prediction 161 210 - -
Vvi3g1176 812 MobiDBLite consensus disorder prediction 334 383 - -
Vvi3g1176 812 MobiDBLite consensus disorder prediction 95 115 - -
Vvi3g1176 812 MobiDBLite consensus disorder prediction 482 497 - -
Vvi3g1176 812 MobiDBLite consensus disorder prediction 161 202 - -
Vvi3g1176 812 PANTHER TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 7 796 IPR039900 GO:0000290
Vvi3g1176 812 MobiDBLite consensus disorder prediction 361 383 - -
Vvi3g1176 812 MobiDBLite consensus disorder prediction 478 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1176 Vvi-Chr3 16344705 16360523 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1176 K12617 - vvi:100255521 1521.52