Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1175 ATGCTAAATTACAGTAGGAACCGAGCTCATTCAAAACCAAACCGATCTTTCTCACTTGAAGCCATGGATCTTGCTGACTCAAGACGTAAGAGCAATGTTACGGGAAAAGTTCTTATGGCTATTTCCCTCATTACTCTCTGTATTATCATTCTCAAGCGGTCACCAAACTTTAGCAGCCCCAGCCCGTTCTCCCACCGTCAGCCCGGCGTAACACACGTCTTAGTAACTGGAGGTGCTGGCTACATAGGTTCTCATGCTGCCCTTCGGCTTTTGAAGGATTCACACCGTGTAACTATAGTGGACAATCTTTCTCGGGGAAACCTAGGTGCTGTAAAGGTTCTCCAACAGCTATTTCCGGACCCTGCACAACTACAGTTCATTTATGCTGACCTTGGGGATGCAAAAGCTGTTAACAAAATATTTTCTGAAAACGAGTTTGATGCTGTGATGCATTTTGCAGCTGTTGCTTATGTTGGTGAGAGTACAATGGATCCTCTTAGGTACTATCATAATATTACTTCCAATACATTGATGGTATTAAAGGCAATGGCAGCACATGGTGTAAAGACATTGATCTATTCCAGTACTTGTGCAACATACGGCGAGCCTAAAAAGATGCCGATTACTGAAGGAACCCCTCAAGTCCCAATCAACCCGTATGGAAAAGCTAAGAAGATGGCAGAAGATATGATCATCGACTTCTCAAAGAATTCCGACATGGCTGTTATGGTCTTAAGGTATTTCAATGTGATTGGGTCGGATCCAGAGGGCAGACTAGGAGAAGCTCCACGGCCTGAACTGCGTGAGCATGGTCGTATATCTGGTGCTTGTTTTGATGCAGCTCTTGGGATTATTCCTGGGCTAAAGGTTAAAGGAACAGACTACAAAACAGCAGATGGCACTTGTGTCCGGGACTATATCGATGTCACTGACTTGGTTGATGCTCATGTAAAAGCTCTTGCCCATGCAAAACCTAAGAAAGTTGGCATCTACAATGTTGGAACAGGAAAAGGTAGATCAGTGAAGGAGTTCGTCGAAGCATGCAAGAAGGCAACAGGGGTGGACATAAAGGTCGAATACCTTGACCGGCGACCCGGTGACTATGCAGAAGTGTACAGTGATCCTTCCAAGATTCTCCGGGAGCTCAACTGGACAGCCCAATACACTAATCTCCAAGAGAGCTTGCAGACCGCGTGGAGGTGGCAAAAATCTCACAGAAATGGCTATGGTACCCGAATGTCTCTGCATTCTTGA 1254 0.4545 MLNYSRNRAHSKPNRSFSLEAMDLADSRRKSNVTGKVLMAISLITLCIIILKRSPNFSSPSPFSHRQPGVTHVLVTGGAGYIGSHAALRLLKDSHRVTIVDNLSRGNLGAVKVLQQLFPDPAQLQFIYADLGDAKAVNKIFSENEFDAVMHFAAVAYVGESTMDPLRYYHNITSNTLMVLKAMAAHGVKTLIYSSTCATYGEPKKMPITEGTPQVPINPYGKAKKMAEDMIIDFSKNSDMAVMVLRYFNVIGSDPEGRLGEAPRPELREHGRISGACFDAALGIIPGLKVKGTDYKTADGTCVRDYIDVTDLVDAHVKALAHAKPKKVGIYNVGTGKGRSVKEFVEACKKATGVDIKVEYLDRRPGDYAEVYSDPSKILRELNWTAQYTNLQESLQTAWRWQKSHRNGYGTRMSLHS* 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1175 417 Gene3D - 73 334 - -
Vvi3g1175 417 PANTHER UDP-GLUCOSE 4-EPIMERASE 71 411 - -
Vvi3g1175 417 CDD UDP_G4E_1_SDR_e 72 403 IPR005886 GO:0003978|GO:0006012
Vvi3g1175 417 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 72 409 IPR036291 -
Vvi3g1175 417 Gene3D - 252 387 - -
Vvi3g1175 417 Pfam GDP-mannose 4,6 dehydratase 74 389 IPR016040 -
Vvi3g1175 417 NCBIfam UDP-glucose 4-epimerase GalE 73 408 IPR005886 GO:0003978|GO:0006012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1175 Vvi-Chr3 16337483 16343396 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1175 27 408 Miscellaneous Gene Families AT4G00110 25.000 7.79e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1175 K12448 - vvi:100250343 829.706