Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1170 ATGAGTCCATTTGTGGGGAAGGGAAAGGGCTTGAAGATCAAGTGCCAGGCCACCAGCATTCCGGCCAATCGAGTTCCTGACATGGGCAAGAGAAAGCTCATGAACTTGCTTTTGTTGGGTGTTGTTTCCCTCCCCTCAGCTGGCATGTTGATTCCTTATGCCACCTTCTTTGCACCTCCTGGAACAGGATCTGCTGGAGGTGGTACTGTGGCCAAGGATGCACTTGGAAATGATGTCATTGCAGATGAATGGCTTAAGACTCATGGCCCTGGTGACAGAACCCTAACACAAGGGTTGAAGGGAGACCCCACCTACCTTGTTGTGGAGGATGACAAAACCCTTGCCACCTATGGTATTAACGCGGTCTGCACCCATCTTGGGTGTGTTGTGCCGTGGAATACAGCTGAGAACAAGTTCATCTGCCCATGCCATGGATCTCAGTACAACAACCAAGGCAGGGTTGTCAGAGGACCTGCTCCTCTGTCATTGGCGCTGGCGCATGCAGATATTGATGACGGGAAGGTAGTGTTTATTCCTTGGGTTGAGACAGATTTCAGAACAGGTGAAGATCCATGGTGGGCCTAA 585 0.5094 MSPFVGKGKGLKIKCQATSIPANRVPDMGKRKLMNLLLLGVVSLPSAGMLIPYATFFAPPGTGSAGGGTVAKDALGNDVIADEWLKTHGPGDRTLTQGLKGDPTYLVVEDDKTLATYGINAVCTHLGCVVPWNTAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHADIDDGKVVFIPWVETDFRTGEDPWWA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1170 194 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 14 183 IPR014349 GO:0051537
Vvi3g1170 194 Gene3D Single helix bin 15 59 - -
Vvi3g1170 194 Gene3D - 60 194 IPR036922 GO:0051537
Vvi3g1170 194 Hamap Cytochrome b6-f complex iron-sulfur subunit [petC]. 17 194 IPR023960 GO:0016020|GO:0045158|GO:0051537
Vvi3g1170 194 SUPERFAMILY ISP domain 23 193 IPR036922 GO:0051537
Vvi3g1170 194 FunFam Cytochrome b6-f complex iron-sulfur subunit 16 59 - -
Vvi3g1170 194 Pfam Rieske [2Fe-2S] domain 100 163 IPR017941 GO:0051537
Vvi3g1170 194 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 81 177 IPR017941 GO:0051537
Vvi3g1170 194 CDD Rieske_cytochrome_b6f 69 194 - -
Vvi3g1170 194 FunFam Cytochrome b6-f complex iron-sulfur subunit 60 194 - -
Vvi3g1170 194 PRINTS Rieske 2Fe-2S subunit signature 139 151 IPR005805 GO:0016020|GO:0051537
Vvi3g1170 194 PRINTS Rieske 2Fe-2S subunit signature 151 163 IPR005805 GO:0016020|GO:0051537
Vvi3g1170 194 PRINTS Rieske 2Fe-2S subunit signature 118 129 IPR005805 GO:0016020|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1170 Vvi-Chr3 16198630 16200100 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1170 K02636 - vvi:100245219 385.956