Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1167 ATGATGGCAGAGGGTAGAAATGAAGAAGCTAAGGAGATGCGGCATAGAAACTCTACCATGAAGATGAACGACACACCAGACTGGGACACTATAGATTGGGCGGAGGTAGATGACTCAAAAGATTTGTTGAAGATAGTCTTGTCGAGGGTCATAGAGAAACTCTGTGTTGTGTGGATTCAAGAACCAGCAGTTTTCGTTGGAGTCGAAGAAGAGGCCCAATGGATCCAAAGAGAGTTGATGCACGCTCGGCTAAAATATAGTTATGTCCCAGAGCAATTAATGGATGTTGTCTATGATTTTGAAGATGTGATTGATGACCTTATACTCAGATCAGCCGCAAAGCAAAGGAGAATAGGAAACTGGGAGAGGTGCCTTTTGTTAATAAGAATTCACAAGAAGCTAGAATTGATCAAGTCTAAGATCCCTGCTCTTCCTCATCTCCCACGTTATTACTTATTACAAAGTGGCGGCCCCTCTAACTATATTGAAGAAATAGACTGGTCAGACATCTTCTTGATACATGGTCAGAGTATGGCAAACACGGTTGTTTCCCCAGTGGAAGAGAAGGTATCAGCTCTGCTAGCTCAGGAGGCAATTCATCCCTATACCAAGAAGAAGGCCATGCGGGTACTAGACAAACTCAGGTCTCTGAATGGTTTTCTCAAAGGCTTAGAATCAGTAGAATTAGATGATGGTGGAATGGTTTGGATGGAGGAGCTGTCCCATGTTTGCCTGTCTGCTGTGGTAGCCATTGAGGACTTCATCAACAGAACAGAACGGCTCACGAAAAGAAGTTGGATGGGACCTTCCAAGGGATTTCTTTCGGCTTTTGGCAAATTCAAATCTCAGGATAAGCTTGCTGTGGAGATGGACAAAATATATGCCAAGATCCAAAACCTCTCTATCCACCGGCCAACAGCAGTCAACCCACAAGGTCAAAGTAGGAACCCAAAGTCTACCTTGGGTTCTACCGCCCGAATCCCACGACAGCCAACAACGCAAGAACCTGATCTCGCTAGCTTTGGTGATGATGTGCATGCAATGATAGCACGGTTGCTTACAGATGATGAGAGTTTCAGAGTGATTCCAATTATGGGTATGCAAGGCATCGGAAAGACAACCCTAGCAAATTTGATCTTTAACCATAAAGCTGTTGTGGATCATTTCCCCTTTGCTGTTTGGAGGTCAGATGGCTATCGACTTCAGCTTCGTAACAAGGAAGAATTGATGGAGTCCGATCTAAGTCAATTGGGAGATGTGTGGAGTTATGATGACGAGATGCAACGACTGAAAGCTTTCTTGATTAATAACAGGTCTCTCATAGTTCTAGATGATTCGCATCTCTTGTACGACATGCTAGAAGTGCTCCCAGATACATTAAATGGCAGTAGAATGATTTTGACTACTTGCGAAACAAGGCTACCTCCAAATCTCAAAATGAAGAGTGATCCTCACCAACTGCGGTTACGGACAGATGAGGAGAGTTGGGCATTGTTTACCCATGCTTTGAAATTTAGCATACCCCCAGAATTGCTAAAGCTGAAAGACGAAATTGCAAAAAGATGTGGGGGGTTGCCACTGCTGATTGTAAAATTGGGGGAAGCACTCTCACACAAGGATGCAACCATTGAGGAGTGGTCCACTGCACTTCAACAATTTCATCATGACCAACAGCAACTTTGGCCCAATACCATCTACAAGATCCATAAGGATTTGTCCTTGTACATGAGGAGATGTCTATTTTATTTCACTCTATTTCCTCAAGATTTTGATATTCCGGCAAGAAGATTGATAACATTGTGGGTTGCAGAGGACTTGGTACAGCCAGAGGGCGAGAATGAAACTCCAGAAGATGTTGCAGAAAGGTGTTTGAATTTCTTGATAGCCCAGGGAATGGTTCAAGTGACAAAGAAGAAGCTTAATGGGAATGTTAAAATGGTGCGATTGCCCGATGCCCTAAGACAATATTGGTCATCCAAAGCTCAACAAGCCACATTTCTTGGAGTTCATACTAACACAAGATCTGAGTTGTCCCTAGGCACCAATAAGATCCGTCGTCTGGTTGATCATCTTGATGAAGAAGATATCAGCTTTGATCATATTCATGGTAATCACAACAGAACTTCTAGTACTTCTTTGACACCTTGCTACAAAGACGCACTTTCTTTTCTGTCCTTTGATACTCGAGAAGAAAGCAAACCAGGAGAAGAAGTGGGAAACTTTCTTCATCAAAGCATATCCAGTGGTGGCTTCCTAGTGCTGCTCGTGCTTGATCTCGAAAATGTATTCAGACCAAAGTTACCTGAGGCAATTGGCAAACTAACTCGACTAAGGTACCTTGGCTTAAGATCTACATTCCTCGAGATACTTCCATCATCTATAAGCAAGTTGCAGAATGTTCAAACACTGGACATGAAGCATACTTGCATCAACGCTCTTCCTTATTCAATCTGGAAGCTACAACAATTGCGACACTTACACTTGAGTGGGAGTTGTCGAAGTAAACTTATGCTTCGACATGATACAAATATTCCTACTATCCTCCAAACATTGTGTGGGCTTCTTGTAGATGAGGAGACTCCCGTAAGAGATGGCCTAGACAGGTTACTCGATATTAGGAAATTGGGATTGACAGTATCATCTAAACAAGAGGCAATAACATTGCAACTGCAGGCAGTAGTTGACTGGGTTCTAAAACTGAACCAACTCCGGTCTTTAAGGCTCAAATCTATTGATGAAAGCAATCAGCCATGGGATCTAGAGTTGAAGCCTTTAGTAAGCCTTGTGAATCTTTCTTACATTTACTTGCTCGGACGGTTAAGGAATCCATCCATTATGTCCCAATTCCCATACAGCCTCATCGACCTCACCTTATCAGGGTCAGGACTTGTAGAAGATCCAATGCAGTCACTGGATAAGCTTCCCAACCTTAGAAGTCTTAAATTGATTGCCAAATCTTATTTAGGGAAGAACATGCTTTGCTCTTTAGGAGGCTTTCCTCAGCTTCGAGTTCTTAAACTATGGAAGTTAGAGCAACTGGAGGAATGGAATGTAGAGAAAGGAGCACTACGAGCTCTTCGAGATTTGGAGATTAGGTTCTGCAGAAGTCTGAAAATTCTTCCTGCAGAATTGCTACATAGAACTCTCTTGAAAATTGAAATTATATCTGCCCAGGTGTGA 3180 0.4277 MMAEGRNEEAKEMRHRNSTMKMNDTPDWDTIDWAEVDDSKDLLKIVLSRVIEKLCVVWIQEPAVFVGVEEEAQWIQRELMHARLKYSYVPEQLMDVVYDFEDVIDDLILRSAAKQRRIGNWERCLLLIRIHKKLELIKSKIPALPHLPRYYLLQSGGPSNYIEEIDWSDIFLIHGQSMANTVVSPVEEKVSALLAQEAIHPYTKKKAMRVLDKLRSLNGFLKGLESVELDDGGMVWMEELSHVCLSAVVAIEDFINRTERLTKRSWMGPSKGFLSAFGKFKSQDKLAVEMDKIYAKIQNLSIHRPTAVNPQGQSRNPKSTLGSTARIPRQPTTQEPDLASFGDDVHAMIARLLTDDESFRVIPIMGMQGIGKTTLANLIFNHKAVVDHFPFAVWRSDGYRLQLRNKEELMESDLSQLGDVWSYDDEMQRLKAFLINNRSLIVLDDSHLLYDMLEVLPDTLNGSRMILTTCETRLPPNLKMKSDPHQLRLRTDEESWALFTHALKFSIPPELLKLKDEIAKRCGGLPLLIVKLGEALSHKDATIEEWSTALQQFHHDQQQLWPNTIYKIHKDLSLYMRRCLFYFTLFPQDFDIPARRLITLWVAEDLVQPEGENETPEDVAERCLNFLIAQGMVQVTKKKLNGNVKMVRLPDALRQYWSSKAQQATFLGVHTNTRSELSLGTNKIRRLVDHLDEEDISFDHIHGNHNRTSSTSLTPCYKDALSFLSFDTREESKPGEEVGNFLHQSISSGGFLVLLVLDLENVFRPKLPEAIGKLTRLRYLGLRSTFLEILPSSISKLQNVQTLDMKHTCINALPYSIWKLQQLRHLHLSGSCRSKLMLRHDTNIPTILQTLCGLLVDEETPVRDGLDRLLDIRKLGLTVSSKQEAITLQLQAVVDWVLKLNQLRSLRLKSIDESNQPWDLELKPLVSLVNLSYIYLLGRLRNPSIMSQFPYSLIDLTLSGSGLVEDPMQSLDKLPNLRSLKLIAKSYLGKNMLCSLGGFPQLRVLKLWKLEQLEEWNVEKGALRALRDLEIRFCRSLKILPAELLHRTLLKIEIISAQV* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1167 1059 Pfam Leucine rich repeat 776 830 IPR001611 GO:0005515
Vvi3g1167 1059 MobiDBLite consensus disorder prediction 305 337 - -
Vvi3g1167 1059 SUPERFAMILY L domain-like 748 1052 - -
Vvi3g1167 1059 Gene3D - 491 569 IPR042197 -
Vvi3g1167 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 331 582 IPR027417 -
Vvi3g1167 1059 PANTHER DISEASE RESISTANCE PROTEIN RP 121 1036 IPR044974 GO:0006952
Vvi3g1167 1059 MobiDBLite consensus disorder prediction 305 339 - -
Vvi3g1167 1059 Gene3D - 319 482 IPR027417 -
Vvi3g1167 1059 MobiDBLite consensus disorder prediction 1 21 - -
Vvi3g1167 1059 Gene3D Ribonuclease Inhibitor 728 1056 IPR032675 -
Vvi3g1167 1059 PRINTS Disease resistance protein signature 361 376 - -
Vvi3g1167 1059 PRINTS Disease resistance protein signature 522 536 - -
Vvi3g1167 1059 PRINTS Disease resistance protein signature 1021 1037 - -
Vvi3g1167 1059 PRINTS Disease resistance protein signature 433 447 - -
Vvi3g1167 1059 Gene3D - 570 661 IPR036388 -
Vvi3g1167 1059 Pfam NB-ARC domain 344 578 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1167 Vvi-Chr3 16158815 16162122 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1167 - - vvi:104878948 2103.18