Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1165 ATGAAGAGTGATCCTCACCCACTGCGGTTACGGACAAATGAGGAGAGTTGGGCATTGTTTACCCATGCATTGAAATTTAGCCTACCCCCAGAATTGCTAAAGCTGAAAGAAGAAATTGCAAAAAGATGTGGGGGGCTGCCACTGCTGATTGTAAAATTGGGGGAAGCACTCTCACACAAGGATGCAACCATTGAGGAGTGGTCCACTGCACTTCAACAATTTCATCATGACCAACAGCAACTTTGGCCCAATACCCTCTACAAGATCCATAAGGATTTGTCCTTGTACATGAGGAGATGTCTATTTTATTTCACTTTATTTCCTCAAGATTTTGATATTCCGGCAAGAAGATTGATAACATTGTGGGTTGCAGAGGACTTGGTACAGCCAGAGGGCGAGAATGAAACTCCAGAAGATGTTGCAGAAAGGTGTTTGAATTTGTTGATAGCCCAGGGAATGCTTCAAGTGACAAAGAAGAAGCTTAATGGGAATGTTAAAATGGTGCGATTGCCCGATGCCCTAAGACAATATTGGTCATCCAAAGCTCAACAAGCCACATTTCTTGGAGTTCATACTAACACAAGATCTGAGTTGTCCCTAGGCACCAATAAGATCCGTCGTCTGGTTGATCATCTTGATAAAGAAGATATCAGCTTTGATCATATTCATGGTAATCACAACAGAACTTCTAGTAGTTCTTTGACACCTTGCTACGAAGATGTACTTTCTTTTCAGTCCTTTGATACTCGAAAAGAAAGCAAACCAGGAGAAGAAGTGGGAAACTTTCTTCGTCAAAGCATATCCAGTGGTGGCTTCCTAGTACTGCTCGTGCTTGATCTCGAAAATGTATTCAGACCAAAGTTACCTGAGGCAATGGGCAAACTAACTCGACTAAGGTACCTTGGCTTAAGATCTACATTCCTCGAGATACTTCCATCATCTATAAGCAAGTTGCAGAATGTTCAAACACTGGACATGAAGCATACTTGCATCAACACTCTTCCTAATTCAATCTGGAAGCTACAGCAATTGCGACACTTACACTTGAGTGAGAGTTGTCGAAGTAAACTTATGCTTCGACATGATACAAATATTCCTACAATCCTCCAAACATTGTGTGGGCTTCTTGTAGATGAGGAGACTCCCGTAAGAGATGGCCTAGACAGGTTACTCGATATTAGGAAATTGGGATTGACAGTATCATCTAAACAAGAGGCAATAACATTGCAACTGCAGGCAGTAGTTGACTGGGTTCTAAAACTGAACCAACTCCGGTCTTTAAGGCTCAAATCTATTGATGAAAGCAATCAGCCATGGGATCTAGAGTTGAAGCCTTTAGTAAGCCTTGTGAATCTTTCTTACATTTACTTGCTCGGATGGTTAAGGAATCCATCCATTATGTCCCAATTCCCATACAGCCTCATCGACCTCACCTTATCAGGGTCAGGACTTGTAGAAGATCCAATGCAGTCACTGGATAAGCTTCCCAACCTTAGAAGTCTTAAATTGCTTGCCAAATCTTATTTAGGGAAGAACATGCTTTGCTCTTTAGGAGGCTTTCCTCAGCTTCGAGTTCTTAAACTATGGAAGTTAGAGCAACTGGAGGAATGGCATGTAGAGAAAGGAGCACTACAAGCTCTCCGAGATTTGGAGATTAGATTCTGCAGAAGTCTGAAAATTCTTCCTGCAGAATTGCTACATAGAACTCTCTTGAAAATTGAAATTATATCTGCCCAGTAA 1740 0.4167 MKSDPHPLRLRTNEESWALFTHALKFSLPPELLKLKEEIAKRCGGLPLLIVKLGEALSHKDATIEEWSTALQQFHHDQQQLWPNTLYKIHKDLSLYMRRCLFYFTLFPQDFDIPARRLITLWVAEDLVQPEGENETPEDVAERCLNLLIAQGMLQVTKKKLNGNVKMVRLPDALRQYWSSKAQQATFLGVHTNTRSELSLGTNKIRRLVDHLDKEDISFDHIHGNHNRTSSSSLTPCYEDVLSFQSFDTRKESKPGEEVGNFLRQSISSGGFLVLLVLDLENVFRPKLPEAMGKLTRLRYLGLRSTFLEILPSSISKLQNVQTLDMKHTCINTLPNSIWKLQQLRHLHLSESCRSKLMLRHDTNIPTILQTLCGLLVDEETPVRDGLDRLLDIRKLGLTVSSKQEAITLQLQAVVDWVLKLNQLRSLRLKSIDESNQPWDLELKPLVSLVNLSYIYLLGWLRNPSIMSQFPYSLIDLTLSGSGLVEDPMQSLDKLPNLRSLKLLAKSYLGKNMLCSLGGFPQLRVLKLWKLEQLEEWHVEKGALQALRDLEIRFCRSLKILPAELLHRTLLKIEIISAQ* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1165 579 Pfam NB-ARC domain 3 100 IPR002182 GO:0043531
Vvi3g1165 579 Gene3D - 12 91 IPR042197 -
Vvi3g1165 579 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 103 IPR027417 -
Vvi3g1165 579 SUPERFAMILY L domain-like 269 573 - -
Vvi3g1165 579 PANTHER DISEASE RESISTANCE PROTEIN RP 9 557 IPR044974 GO:0006952
Vvi3g1165 579 Pfam Leucine rich repeat 297 350 IPR001611 GO:0005515
Vvi3g1165 579 Gene3D Ribonuclease Inhibitor 244 576 IPR032675 -
Vvi3g1165 579 Gene3D - 92 182 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1165 Vvi-Chr3 16128956 16130695 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1165 - - vvi:100854304 1140.95