Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1138 ATGGCCCCTGGAACACCAGAGCTTCAACCTCCCAAGTTCCCAAGCGTCAAATCTCTATCCGAATCTTCTGCTCTCACCTCCATCCCTTCCTCCTACACCTTCACCACTGATCCTAACCAACACATCGCTTCAGACCCACAAGACTCTATCCCAGTCATTGATTTTTCCTTACTCACCTCCGGTAATCCTGATCAACGCTCCAAAGCCATCCAAGACCTTCACAGGGCCTGTGAGAAATGGGGCTTCTTCATGGTGATCAATCACGGCGTGGCGGAGAGTTTGATGAAGGGGATGATTGAGGCGTGTAGAGGATTCTTTGATCTGACGGAGGAGGAGAAGGGGGAGTTTGAAGGAAAGCCTGTGCTGGCACCCATCAGATGTGGTACAAGCTCTAATACAAGCCTGGATAAAATATTATTCTGGAGAGATTTTCTCAAGGTGTTTCTGCATCCTCAGTTTCACTCACTCAACAAGCCTCCCGGCTTCAGTGAGGTTTCATTAGAGTACAGTCAAAGGATTAAAAAGGTGGTAGAAGAATTGCTTAAAGGGATATCAAAGAGCTTGGGATTGGAAGAGTGGTATATAGACAAGGCCATGAATATGAGTTCAGGTTTGCAAGTCCTGGTTGCCAACTTGTATCCACCTTGTCCTCAGCCAGAACATGCAATGGGCTTGCCCCCTCATTCCGACTATGGCTTATTGACTGTCCTCACACAGAATGAAGTTGGCGGCCTTCAAGTGCAGCATCAAGGCAAATGGTTCAATGTGAATCTCATCCCCAACTCTCTTTTAGTCAACATTGGTGATCATCTTGAGGTTCTAAGCAACGGGAAGTACAAGAGTGTCTTACATAGAGTTGTGGTGAACAGAAAAGCCACGAGGCTATCCGTCCTCATCACAAATGGACCATCCCTAGACACAGTTGTTGCGCCAGCCCCAGAATTGATAGACGAAAGCCATCCACCAGCATATTTTGGGATGAAATTCCAAGAAACCCTTACACTTAGCCAGACCAACAAGCATCATGAGAAAAGTATCCTGGATCAGGTCCGGATTTGA 1059 0.4693 MAPGTPELQPPKFPSVKSLSESSALTSIPSSYTFTTDPNQHIASDPQDSIPVIDFSLLTSGNPDQRSKAIQDLHRACEKWGFFMVINHGVAESLMKGMIEACRGFFDLTEEEKGEFEGKPVLAPIRCGTSSNTSLDKILFWRDFLKVFLHPQFHSLNKPPGFSEVSLEYSQRIKKVVEELLKGISKSLGLEEWYIDKAMNMSSGLQVLVANLYPPCPQPEHAMGLPPHSDYGLLTVLTQNEVGGLQVQHQGKWFNVNLIPNSLLVNIGDHLEVLSNGKYKSVLHRVVVNRKATRLSVLITNGPSLDTVVAPAPELIDESHPPAYFGMKFQETLTLSQTNKHHEKSILDQVRI* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1138 352 MobiDBLite consensus disorder prediction 1 20 - -
Vvi3g1138 352 FunFam Uncharacterized protein 12 341 - -
Vvi3g1138 352 Pfam non-haem dioxygenase in morphine synthesis N-terminal 50 151 IPR026992 -
Vvi3g1138 352 SUPERFAMILY Clavaminate synthase-like 16 340 - -
Vvi3g1138 352 Gene3D - 12 343 IPR027443 -
Vvi3g1138 352 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 45 322 - -
Vvi3g1138 352 Pfam 2OG-Fe(II) oxygenase superfamily 207 297 IPR044861 -
Vvi3g1138 352 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 203 303 IPR005123 -
Vvi3g1138 352 PRINTS Isopenicillin N synthase signature 228 249 - -
Vvi3g1138 352 PRINTS Isopenicillin N synthase signature 73 90 - -
Vvi3g1138 352 PRINTS Isopenicillin N synthase signature 263 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1138 Vvi-Chr3 15307070 15312239 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1138 50 331 Glycosyltransferase AT5G59530 33.218 1.16e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1138 - - vvi:100253700 714.916