Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1130 ATGTTCTCGCCATCATTCTCCCAGGCTTCCCTCCCTCATCAGTGCCTAGACAACCAAAAATTGGCCCTTCTGCGATTTAAGAATGAATCCTTCTCATTTTCATCATCCTCATCTTCGAAATCTGAATCTTGGAAGCCAGATACTGACTGTTGTTCCTGGGAAGGCATCAAATGTGACAACAACACTGGTCATGTGATCAGCCTTGACCTCAGTTGGGATCAACTTGTTGGAGACATTGATTCTAACAGCAGCCTATTCAAACTTCACAGCCTCATGAGGCTCAACCTCTCCCATAACTCCTTTCATTTTTTCAACTTTAATTCTGAGCTTTTTGGGTTTCCCCAGCTTGTGAATTTGACGCACCTTGATCTTGCCAATTCAGGTTTTTCAGGCCAAGTACCTCTCCAAATGTCTCGCTTGACAAAATTGGTGTTATGGGACTGTTCCCTTTCAGGTCCAATTGATTCTTCTATTTCAAATCTTCATCTTCTCTCAGAACTTGTGCTCTCAAATAACAATCTCTTGTCAGAAGTTCCCGATGTCCTGACAAATCTCTATTCTCTGGTCTCCATTCAACTTAGTTCATGTGGACTGCATGGTGAATTTCCAGGAGAATTCCCTCAGCAAAGTGCACTCAGGGAATTGTCCCTCTCATGCACAAAATTTCATGGGAAATTACCGGAGTCAATAGGCAACCTTGAGTTTTTGACCAACTTATATCTTGACAATTGTAATTTCTCTGGAACACTCCCAAACTCAATTGGCAACCTTACAGCACTTCAATATTTGCTCCTTGATTTGCGCAATAACTCATTTGATGGTATCACTGACTATTCTTTGTTTACACTCCCATCTTTGAAAGACCTTATGCTTGGAAAGAACCGGTTTCATAGTCTACCTGATGAGGGTCCCTTCACACCCTCCTCAAGTTTGAGTTGGCTGGATCTGAGTGAAAATGAATTCCAGGGCCCGATTTCAAGACTGCTCACTGTGCTCACAAGCCTAGAAATCCTTAATCTTTCTTCCAACAAGTTCAATGGCAGTATGGATCTGGGCATTGCCAATTTAACATTTCCCCAACTTGTTTCTCTTCACCTATCTCATAATCACTGGTCGATGACTGATAGTGATGATTTAGCCTTTCCCAACCTTAAGATGTTGAAGATGCGTTCATGCAATGTAACAAAATTCCCAAGTTTCTTGAGAAACCTTCACAGTATGGAAGCTCTGGACCTTTCCAGCAATGGAATCAATGGTCAAATACCCAATTGGATTTGGAGTAGCTCTTTGATCGGTCTGAATCTTTCCCAGAACTTGCTAACGGGTTTAGATCGACCTTTGCCAGATGCCTCCTCACTTCAAATGGGAGCTTTGGATGTTCATTCCAACAAACTACAAGGTTCACTTCCATTTCTGTCCCAGCAGATTGAATTTCTAGATTATTCTGATAACAATTTCAGGTCTGTCATCCCAGCTGACATTGGTTCATATCTCTCCAAGGCGTTCTTCTTTTCAGTTTCAGGCAATAACCTCATTGGAAAAATCCCCACATCAATCTGCAGCGCCAGGAAACTTCAAGTTCTTGATCTGTCGGATAACCAGTTGAATGGTACAATTCCTACATGTTTGGGGAACTTCAGCAGTGAACTATTAGTACTTAATCTAGGCGGGAACAATTTGCAAGGAACCATGCCTTGGAGTTATGCAGAAACCCTAAGCACGCTTGTGTTCAATGGAAATGGGTTAGAAGGAAAGGTTCCAAGATCTTTGTCAACTTGTAAAGGATTGGAAGTTTTAGACCTTGGAGACAACCAAATACATGATACCTTCCCGTTCTGGTTGGGGAATCTACCACAGTTGCAGGTTCTTGTCTTGCGCTCCAATAAGTTCTATGTGAGTGCAAGTTATTCTTATTACATCACAGTGAAACTAAAAATGAAAGGAGAAAACATGACACTAGAAAGGATCCTAAATATTTTCACATCCATCAACCTCTCCAACAATGAATTTGAAGGAAAAATTCCAAAGTTGATCGGAGAACTCAAGTCACTGCACGTCCTGGACTTGTCCCATAACAATCTTGATGGCCCTATTCCCTCATCGCTCGAAAATCTACTCCAACTTGAGTCATTAGATCTCTCACATAATAAGCTTTCAGGAGAGATCCCTCAGCAACTTGTAAGGCTGACATTCCTTTCCTTCATAAACCTGTCAGAAAACGAACTCCAAGGATCTATACCAAGTGGTGCACAATTTAACACATTTCCTGCAGGATCCTATGAGGGAAACCCAGGGCTATGTGGGTTTCCATTGCCCACGAAGTGTGAAGCTGCAAAGGAAGCACTGCCCCCAATTCAGCAACAGAAGCTGGAATTGGATTCCACGGGTGAATTTGATTGGACAGTGCTACTAATGGGATATGGTTGTGGACTAGTAGCAGGGTTGAGCACGGGATACATCTTATTCTGGGGAAATGGATTCATTGCTGAAAGTATTACAACAAAAATGCAACAATCACGCTTGAGATCAAGCCAGCGAAGGAGGAGTTAG 2550 0.4224 MFSPSFSQASLPHQCLDNQKLALLRFKNESFSFSSSSSSKSESWKPDTDCCSWEGIKCDNNTGHVISLDLSWDQLVGDIDSNSSLFKLHSLMRLNLSHNSFHFFNFNSELFGFPQLVNLTHLDLANSGFSGQVPLQMSRLTKLVLWDCSLSGPIDSSISNLHLLSELVLSNNNLLSEVPDVLTNLYSLVSIQLSSCGLHGEFPGEFPQQSALRELSLSCTKFHGKLPESIGNLEFLTNLYLDNCNFSGTLPNSIGNLTALQYLLLDLRNNSFDGITDYSLFTLPSLKDLMLGKNRFHSLPDEGPFTPSSSLSWLDLSENEFQGPISRLLTVLTSLEILNLSSNKFNGSMDLGIANLTFPQLVSLHLSHNHWSMTDSDDLAFPNLKMLKMRSCNVTKFPSFLRNLHSMEALDLSSNGINGQIPNWIWSSSLIGLNLSQNLLTGLDRPLPDASSLQMGALDVHSNKLQGSLPFLSQQIEFLDYSDNNFRSVIPADIGSYLSKAFFFSVSGNNLIGKIPTSICSARKLQVLDLSDNQLNGTIPTCLGNFSSELLVLNLGGNNLQGTMPWSYAETLSTLVFNGNGLEGKVPRSLSTCKGLEVLDLGDNQIHDTFPFWLGNLPQLQVLVLRSNKFYVSASYSYYITVKLKMKGENMTLERILNIFTSINLSNNEFEGKIPKLIGELKSLHVLDLSHNNLDGPIPSSLENLLQLESLDLSHNKLSGEIPQQLVRLTFLSFINLSENELQGSIPSGAQFNTFPAGSYEGNPGLCGFPLPTKCEAAKEALPPIQQQKLELDSTGEFDWTVLLMGYGCGLVAGLSTGYILFWGNGFIAESITTKMQQSRLRSSQRRRS* 850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1130 849 Gene3D Ribonuclease Inhibitor 378 462 IPR032675 -
Vvi3g1130 849 Pfam Leucine rich repeat 284 345 IPR001611 GO:0005515
Vvi3g1130 849 Pfam Leucine rich repeat 683 742 IPR001611 GO:0005515
Vvi3g1130 849 Pfam Leucine rich repeat 571 630 IPR001611 GO:0005515
Vvi3g1130 849 SUPERFAMILY RNI-like 314 748 - -
Vvi3g1130 849 FunFam Tyrosine-sulfated glycopeptide receptor 1 569 780 - -
Vvi3g1130 849 ProSiteProfiles Leucine-rich repeat profile. 707 730 IPR001611 GO:0005515
Vvi3g1130 849 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 203 299 - -
Vvi3g1130 849 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 305 568 - -
Vvi3g1130 849 Pfam Leucine Rich Repeat 524 546 IPR001611 GO:0005515
Vvi3g1130 849 Gene3D Ribonuclease Inhibitor 110 300 IPR032675 -
Vvi3g1130 849 Pfam Leucine rich repeat N-terminal domain 17 59 IPR013210 -
Vvi3g1130 849 Gene3D Ribonuclease Inhibitor 12 109 IPR032675 -
Vvi3g1130 849 Gene3D Ribonuclease Inhibitor 463 782 IPR032675 -
Vvi3g1130 849 Gene3D Ribonuclease Inhibitor 306 377 IPR032675 -
Vvi3g1130 849 SMART LRR_typ_2 88 113 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 617 640 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 332 355 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 705 729 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 404 428 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 681 704 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 161 185 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 283 306 IPR003591 -
Vvi3g1130 849 SMART LRR_typ_2 523 546 IPR003591 -
Vvi3g1130 849 SUPERFAMILY RNI-like 67 426 - -
Vvi3g1130 849 PRINTS Leucine-rich repeat signature 525 538 - -
Vvi3g1130 849 PRINTS Leucine-rich repeat signature 705 718 - -
Vvi3g1130 849 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 13 776 IPR046956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1130 Vvi-Chr3 15118890 15122036 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1130 13 821 Receptor kinase-like Gene Family AT3G05660 36.220 2.52e-137 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1130 - - vvi:100853460 1275.38