Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1128 ATGGCCAATGGTGGTTTGGTCCGTGTTCTCATCCACACTGATGTTACTAAGTACCTAAATTTCAAGGCCGTGGATGGTAGTTTTGTGTACAACAAGGGAAAGATATACAAAGTTCCAGCAACTGATGTTGAAGCACTGAAATCCCCATTGATGGGACTGTTTGAAAAGCGCCGAGCTCGGAAGTTCTTCATTTATGTCCAAGACTATGAGGAGAATGATCCAAAATCTCATGAAGGGATGGATTTAAACAAAGTCACAGCAAGAGATCTTATCTCAAAATATGGGCTGGAGGATGATACAATTGACTTCATTGGTCACTCATTGGCACTTCATAGTGATGATAGTTACTTGGATGAGCCAGCTATGGAATTTGTAAAGAGAATGAAGCTCTATGCAGAGTCCTTGGCACGCTTTCAAGGAGGATCTCCCTATATCTATCCAATGTATGGATTGGGGGAATTGCCTCAGGCATTTGCACGTTTAAGTGCTGTTTATGGTGGCACTTACATGCTCAACAAGCCTGAATGTAAGGTGGAGTTTGATGAAAATGGAAAAGCTTTCGGTGTGACATCTGAAGGGGAAACTGCTAAATGCAAGAAGGTTGTTTGTGATCCATCATATTTACCTGATAAGGTTCAAAAAGTCGGAAAAGTTGCACGTGCTATATGTATAATGAGCCATTCCATTCCAGACACAAATGACTCTCACTCAGTCCAGGTTATTCTTCCACAAAAGCAACTTGGTCGTAAGTCAGATATGTACCTGTTCTGTTGCTCCTATTCTCACAATGTGGCTCCAAAAGGGAAATACATTGCTTTTGTCACAACTGAGGCAGAGACAGATCAACCTGAGGTAGAATTGAAGCGTGGTGTAGATTTACTTGGACCTGTAGACGAGATATTCTATGAAACTTATGACAGATTTGAACCTAAAAACGACCATGAAGTTGACCATTGCTTCATATCTACTAGTTATGATGCAACAACACACTTCGAGTCCACTGTAAAAAATGTGATTGCCATGTACAGTAAGATAACTGGAGAGGAGCTCGATCTTACTGTGGACCTGAGTGCTGCAAGTGCTGCTACTGGAGAATGA 1098 0.4153 MANGGLVRVLIHTDVTKYLNFKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEENDPKSHEGMDLNKVTARDLISKYGLEDDTIDFIGHSLALHSDDSYLDEPAMEFVKRMKLYAESLARFQGGSPYIYPMYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDENGKAFGVTSEGETAKCKKVVCDPSYLPDKVQKVGKVARAICIMSHSIPDTNDSHSVQVILPQKQLGRKSDMYLFCCSYSHNVAPKGKYIAFVTTEAETDQPEVELKRGVDLLGPVDEIFYETYDRFEPKNDHEVDHCFISTSYDATTHFESTVKNVIAMYSKITGEELDLTVDLSAASAATGE* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1128 365 Gene3D - 144 350 IPR036188 -
Vvi3g1128 365 PRINTS Rab GDI/REP protein family signature 132 149 IPR018203 GO:0005092|GO:0007264
Vvi3g1128 365 PRINTS Rab GDI/REP protein family signature 55 70 IPR018203 GO:0005092|GO:0007264
Vvi3g1128 365 PRINTS Rab GDI/REP protein family signature 150 171 IPR018203 GO:0005092|GO:0007264
Vvi3g1128 365 PRINTS Rab GDI/REP protein family signature 6 22 IPR018203 GO:0005092|GO:0007264
Vvi3g1128 365 Pfam GDP dissociation inhibitor 1 353 IPR018203 GO:0005092|GO:0007264
Vvi3g1128 365 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 38 143 - -
Vvi3g1128 365 PRINTS Rab GDI protein signature 322 342 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 PRINTS Rab GDI protein signature 200 214 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 PRINTS Rab GDI protein signature 45 60 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 PRINTS Rab GDI protein signature 243 259 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 PRINTS Rab GDI protein signature 268 286 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 PRINTS Rab GDI protein signature 102 116 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 PRINTS Rab GDI protein signature 301 320 IPR000806 GO:0005093|GO:0015031
Vvi3g1128 365 SUPERFAMILY FAD/NAD(P)-binding domain 1 275 IPR036188 -
Vvi3g1128 365 PANTHER RAB GDP-DISSOCIATION INHIBITOR 1 357 IPR018203 GO:0005092|GO:0007264
Vvi3g1128 365 FunFam Guanosine nucleotide diphosphate dissociation inhibitor 38 143 - -
Vvi3g1128 365 SUPERFAMILY FAD/NAD(P)-binding domain 310 353 IPR036188 -
Vvi3g1128 365 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 1 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1128 Vvi-Chr3 15021733 15043473 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1128 K17255 - vvi:100241864 741.495