Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1126 ATGGCGGAGTCGAGGGTGAAAGAAGAGGCTTTGCAGATAATAGGGCTGTGCCAAGTGTTGCCTCGATTGGTCGTCTTCGATCTCGACTATACTCTCTGGCCTTTCTACTGTGAATGTCGTTCCAAACGCGAAATGCCTTCTTTGTATCCCCATGCTGAAGGCATACTATATGCCCTCAAAGAGAAGGGAATTGATATGGCTATTGCTTCTAGATCACCAACTCCGGATATAGCAAAAACATTTCTTGACAAATTGGGCATCAAGTCAATGTTTGTAGCCCAGGAGATATTTTCCAGTTGGTCACACAAGACAGAGCATTTCCAGAGAATTCATAGGAGGACTGGGGTGCCCTTTAACTCCATGCTCTTTTTCGATGATGAGGATAGGAATATTGAATCGGTTTCCAAAACGGGAGTAACAAGCATTTTGGTAGGCAATGGGTTAAATATTGGAGCATTTAGGCAAGGGCTCACGAAATTCTCCCAGAACTCAGCTTAA 498 0.4418 MAESRVKEEALQIIGLCQVLPRLVVFDLDYTLWPFYCECRSKREMPSLYPHAEGILYALKEKGIDMAIASRSPTPDIAKTFLDKLGIKSMFVAQEIFSSWSHKTEHFQRIHRRTGVPFNSMLFFDDEDRNIESVSKTGVTSILVGNGLNIGAFRQGLTKFSQNSA* 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1126 165 FunFam Magnesium-dependent phosphatase 1 6 165 - -
Vvi3g1126 165 CDD HAD_MDP-1_like 21 144 IPR035679 -
Vvi3g1126 165 NCBIfam HAD-IIIC family phosphatase 23 137 IPR010033 -
Vvi3g1126 165 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 1 164 IPR010036 GO:0016791
Vvi3g1126 165 Pfam Acid Phosphatase 20 162 IPR010036 GO:0016791
Vvi3g1126 165 SUPERFAMILY HAD-like 22 152 IPR036412 -
Vvi3g1126 165 SFLD C1.5.2: MDP Like 3 164 - -
Vvi3g1126 165 SFLD Haloacid Dehalogenase 3 164 - -
Vvi3g1126 165 Gene3D - 5 165 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1126 Vvi-Chr3 14960929 14980463 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1126 K17619 - vvi:100264147 334.339