Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1123 ATGGCATATACCTATCATATGTGTTTAATGTACATATGCTTATTTTCCAATGAATGTCGTTCCAAACGCAAAATGCCTTCTTTGTATCCCCATGCTGAAGGCATACTATATGCCCTCAAAGAGAAGGGAATTGATATGGCTATCGCTTCGAGATCACCAACTCCAGATATAGCAAAAACATTTCTTGACAAATTGGGCATCAAGTCAATGCTTGTAGCCCAGGAAATATTTTCCAGTTTATCACACAAGACACAGCATTTCCAGATAATTCATAGGACTGGGGTGCCCTTTAACTCCATGCTTTTTTTCAATGATGAGGATAGGAATATTGAATCGGTTTCCAAAATGGGAGTAACAAGCATTTTGGTAGGCAATGGGTTAAATATTGGAGCATTAAGGCAAGGGCTCACGAAATTCTCTCAGAACTCAGCTTCATCTGGAAACACCAAACGGAACTGA 459 0.3943 MAYTYHMCLMYICLFSNECRSKRKMPSLYPHAEGILYALKEKGIDMAIASRSPTPDIAKTFLDKLGIKSMLVAQEIFSSLSHKTQHFQIIHRTGVPFNSMLFFNDEDRNIESVSKMGVTSILVGNGLNIGALRQGLTKFSQNSASSGNTKRN* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1123 152 PANTHER MAGNESIUM-DEPENDENT PHOSPHATASE 1 MDP1 19 146 IPR010036 GO:0016791
Vvi3g1123 152 FunFam Magnesium-dependent phosphatase 1 7 145 - -
Vvi3g1123 152 Pfam Acid Phosphatase 27 141 IPR010036 GO:0016791
Vvi3g1123 152 Gene3D - 15 146 IPR023214 -
Vvi3g1123 152 SUPERFAMILY HAD-like 23 134 IPR036412 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1123 Vvi-Chr3 14838441 14852734 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1123 K17619 - vvi:109122378 285.034