Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1121 ATGAAGACCCTAACTGGTTCGTTGCGATCTTCTCGTTTTGAAGCCCTAGATGATCAAAGTTTGGTTCCTACTTCGCCATGGTCTTGGAACAGAGAAACTAAACCACCATTCTCTTCGTACCTTCCTCGGGAAATTGAACCCACTATGGTGGGTGCTGGGCTTGTAAATCTAGGCAACACATGCTTTCTTAATGCAGTGCTCCAATGCTTCACGCACACTGTCCCCCTTGTCCAGAGCCTTCGTTCTTGCAATTATGCCATGCCTTGTCATAGTTTTTATGGAGGGTTCTGCGTTCTTTACACTTTCCGAGATCATATTGAGTCTTCCATAGACGGGCGATCATGCCTTTGA 351 0.4615 MKTLTGSLRSSRFEALDDQSLVPTSPWSWNRETKPPFSSYLPREIEPTMVGAGLVNLGNTCFLNAVLQCFTHTVPLVQSLRSCNYAMPCHSFYGGFCVLYTFRDHIESSIDGRSCL* 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1121 116 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 53 68 IPR018200 GO:0004843|GO:0006511
Vvi3g1121 116 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 31 108 - -
Vvi3g1121 116 Pfam Ubiquitin carboxyl-terminal hydrolase 53 83 IPR001394 GO:0004843|GO:0016579
Vvi3g1121 116 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 52 116 IPR028889 -
Vvi3g1121 116 SUPERFAMILY Cysteine proteinases 50 108 IPR038765 -
Vvi3g1121 116 Gene3D Cysteine proteinases 46 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1121 Vvi-Chr3 14813208 14813558 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1121 47 113 Miscellaneous Gene Families AT4G31670 35.821 6.59e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1121 K11855 - vvi:104882327 175.637