Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1110 ATGGCCTTCTCATCCTCCTCTCTCTCACCTTTCCCCTCCATTTCCTCCATTGATCAGCCCACAAGACCTTCAACAACAAGATCTACTATCTTTGGTTCCAAGCCGAAACTGAGCGTAATTGAGCAGACCCATGTGACCAATTTGGCTTCTTTGAACAGTCAATCTCTGAGATTAAAAGCTTCAAGAGAGTCTCCGGGACTGACTCAGGAACTTACAAGCGACAGACTGGAGAGTATAGCAGAAATTGAAAACAGATATGATGTCTTTGATGAAGTGAAACATCGGTTTTTAAGTTTCAAAAAGCACAAATATTTGGAAAATTTAGAATGCTTTCAAAATCTAGCCACTGCTCAGGCACCGAAGTTCATGGTTATTGCTTGTGCTGATTCTAGAGTTTGTCCCTCCAAGATCCTGGGATTTGAACCAGGAGAAGCTTTTATGGTTCGAAACGTGGCAAATCTGGTGCCTCTGTATGAGAATGGACCCACAGAAACAAATGCTGCTCTTGAGTTTGCTGTAAATACTCTTGAGGTTGAAAATATTCTAGTCATTGGCCACAGCTGCTGTGGGGGAATTCGTGCCCTTATGGGTATGGAAGAAGAAGTAGACTCAAGTAGCTTCATTCAAAGTTGGGTTGTTGTTGGGAAGAATGCAAAGTTAAGAGCCAAGGCTACTGCTTCCAAACTTAGCTTTGATCAGCAGTGCAGAAACTGTGAAAAGGAATCCATCAACTGTTCATTGTTGAACCTTCTCACTTACCCATGGATTAAAGAACGAGTGGAAAGAGGAATGCTTTCAATTCATGGTGGCTACTACGATTTTGTCAACTGTACTTTTGAGAAATGGACTCTGGACTATAAGGAAAGTGGCAGATACCTGGTCAAGGACAGAGTATTTTGGGCCTGA 906 0.4238 MAFSSSSLSPFPSISSIDQPTRPSTTRSTIFGSKPKLSVIEQTHVTNLASLNSQSLRLKASRESPGLTQELTSDRLESIAEIENRYDVFDEVKHRFLSFKKHKYLENLECFQNLATAQAPKFMVIACADSRVCPSKILGFEPGEAFMVRNVANLVPLYENGPTETNAALEFAVNTLEVENILVIGHSCCGGIRALMGMEEEVDSSSFIQSWVVVGKNAKLRAKATASKLSFDQQCRNCEKESINCSLLNLLTYPWIKERVERGMLSIHGGYYDFVNCTFEKWTLDYKESGRYLVKDRVFWA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1110 301 Pfam Carbonic anhydrase 123 275 IPR001765 GO:0004089|GO:0008270
Vvi3g1110 301 FunFam Carbonic anhydrase 84 291 - -
Vvi3g1110 301 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 170 190 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi3g1110 301 CDD beta_CA_cladeB 95 282 IPR045066 GO:0004089|GO:0008270
Vvi3g1110 301 SMART Pro_CA_2 115 283 IPR001765 GO:0004089|GO:0008270
Vvi3g1110 301 SUPERFAMILY beta-carbonic anhydrase, cab 83 287 IPR036874 GO:0004089|GO:0008270
Vvi3g1110 301 Gene3D Carbonic anhydrase 79 292 IPR036874 GO:0004089|GO:0008270
Vvi3g1110 301 MobiDBLite consensus disorder prediction 1 30 - -
Vvi3g1110 301 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 127 134 IPR015892 GO:0004089|GO:0008270|GO:0015976
Vvi3g1110 301 PANTHER CARBONIC ANHYDRASE 46 297 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1110 Vvi-Chr3 14489889 14494771 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1110 K01673 - vvi:100263997 592.808