Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1098 ATGTCTCATATTACTGAAAGCAGATTCTATTCACTTCAAGGACTCGTTAAGCTTTTGGTAAAGAATGATACATCATGGCATGCTAGTGTTAATTCTCAAGAAGTTGGCTTAAGTGAGACTAAGGAGTTAGATATAGAAAAGGAAGAAAAAATATCCCAAGAAATTGAAGGACAAAACTCCCAAGAAAAGAAAGGACAAAATTTTCAAGAAAATGAAGGGCGAAACTACCAAGAAAGTTCAACCAACTACAAGTACAAGAAGAGCGATGAAGCTCCATTATTTTTGGCAACAATGTCAAACATTCAAGACATTGTTGAAGAAACATTGGTTTGTCATCCTCAAGCGCTTGAGCATATTAATAAGGAGGGAATGAACATACTACATGTGGCAATCCTTCACCGTCATATTGAAATTTTTGATGTAGTGGCAAAATCTGAATTGCTTGCAAGAAGTCTATTATCAGCTACAGATAACAAAGGGAACTCCTTATTACATATGGTTGGCCTAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCATTCCAGCTACAAAAAGAGTTGCTGTTGTTTAAGAAAGTGAAGTCAGCCTGTAAGATGCATTTGACCAAGCCTCTCAACAAAGATAACCAGACTGCTGAAGAATTATTTGCTGCTAGGAATGAGAGACTCCATCGAGATGCCAAGGAATGGCTAATGCGCACCACTGAGAATTGCACCATTCTTTCTGTTTTCATAGCCACTGTCGCCTTTGCAGCAGCCTACACGGTACCAGGAGGTCCTAATCAAGACACCGGTATTCCAATCCTTAACTCTAAACCCTTGTTTGTGGTTTTCATATTAGCTGATGTGTTCTCCCTCACTTTGGCTTTGACAACTGTGGGTATATTTCTCTCCATCCTTACATCCTCATTTCCACTACAAGACTTCGAAACATATCTTTTTAAGAAGCTGACACAGGGAATTATATGTATGATCCTCTCGGTCTCAATGATGGCGGTGGCGTTTGGAGCAACAATCATCCTGATCATGATGACACATAATTGGAAAAATGCTGTTTGGAGTGTGGTTGGATTTCTTCCTGTCCCCATTTTTTTTCTCTCATATTCACCTCTACGTTCAGCAGTCCTGGGACGTTGCACAGAATCTTCCAAAAATTTTGTTGCAAAATTCCTCAAAGGTGTTGCCATTGGGGTTGGAATATTCGTCTTTGTCCTCTTTTATTGTTTATATCTAGCTTTCAAAGGACTGTTCTGGACCGTGAAAAAGGCTTTTGGTTGGATTTGTGGGAATAAATCCGATACCCAATCTCCACAGCCAACTGCAGCTCCAATTACTCAAGTTTGA 1353 0.3954 MSHITESRFYSLQGLVKLLVKNDTSWHASVNSQEVGLSETKELDIEKEEKISQEIEGQNSQEKKGQNFQENEGRNYQESSTNYKYKKSDEAPLFLATMSNIQDIVEETLVCHPQALEHINKEGMNILHVAILHRHIEIFDVVAKSELLARSLLSATDNKGNSLLHMVGLKRKSQASEKMQSPAFQLQKELLLFKKVKSACKMHLTKPLNKDNQTAEELFAARNERLHRDAKEWLMRTTENCTILSVFIATVAFAAAYTVPGGPNQDTGIPILNSKPLFVVFILADVFSLTLALTTVGIFLSILTSSFPLQDFETYLFKKLTQGIICMILSVSMMAVAFGATIILIMMTHNWKNAVWSVVGFLPVPIFFLSYSPLRSAVLGRCTESSKNFVAKFLKGVAIGVGIFVFVLFYCLYLAFKGLFWTVKKAFGWICGNKSDTQSPQPTAAPITQV* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1098 450 Gene3D - 12 228 IPR036770 -
Vvi3g1098 450 MobiDBLite consensus disorder prediction 58 81 - -
Vvi3g1098 450 FunFam Uncharacterized protein 10 239 - -
Vvi3g1098 450 PANTHER CASKIN 54 380 - -
Vvi3g1098 450 SUPERFAMILY Ankyrin repeat 81 166 IPR036770 -
Vvi3g1098 450 Pfam Domain of unknown function 231 343 IPR026961 -
Vvi3g1098 450 MobiDBLite consensus disorder prediction 53 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1098 Vvi-Chr3 14204863 14212245 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1098 86 360 Miscellaneous Gene Families AT3G12360 22.222 7.16e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1098 - - vvi:100852868 849.736