Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1078 ATGAGAGTTGATTTTCAGATCCAGTTTTATGCAAGGAATCAAAGCTATGGTATGTGCTTTCAAAGACCTAAGCTAAGGAGGCTGCTTGGAAAGCTAGTTCTGAACTTCATAAACGGAGCTCAAACATTTCCCAATAGATCATATAGGTGGGTTGATGTTAGAGATGTTGCCAATGCACACATTCAAGCATATGAGAGCCCAGAAGCTAGTGGAAGATACTGCTTAGTAGAGAGGGATTTACACAGTTCCGAGACACTGAAGATTTTGTGCAAGATCTACCCTGATTTACCCCTACCTGAAAAATGCGCAGATGACAAACCTTATGCACCATCCTTCCGGGTATCCCAGGATAAAGCTAAGAGTTTAGGCATTCACTTCACTCCTCTGGAGGTGAGCCTGAAGGATACAGTTGAAAGCTTGAAGGAGAAGAACTTGTCAGTTTTTGACTCATGGTATTTACTGGCTAGTCATGCAAATAAGTCATAA 486 0.4177 MRVDFQIQFYARNQSYGMCFQRPKLRRLLGKLVLNFINGAQTFPNRSYRWVDVRDVANAHIQAYESPEASGRYCLVERDLHSSETLKILCKIYPDLPLPEKCADDKPYAPSFRVSQDKAKSLGIHFTPLEVSLKDTVESLKEKNLSVFDSWYLLASHANKS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1078 161 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 42 137 - -
Vvi3g1078 161 FunFam Os02g0811600 protein 4 148 - -
Vvi3g1078 161 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 145 IPR036291 -
Vvi3g1078 161 Gene3D - 16 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1078 Vvi-Chr3 13204830 13220421 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1078 33 148 Miscellaneous Gene Families AT5G19440 62.931 2.08e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1078 - - vvi:100260317 215.698