Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1071 ATGCAATGCAATATCATCAAGATTGGAAACCTTGTTCGCAATAAGGAAAGATTTGTTAAGCGTAGGCAACATCTTGTGGGCCCCAACTCTTCCACTCTAAAGGCACTTGAAATTTTGACAGGATGCTATACTCTTGTTCAGGGGAACACTGTTACTGCTATGGGTTCATTTAAAGGTCTAAAACAAGTCCGAAGGGTGGTGGAAGACTGTATACAGAATAAAATGCATCCAGTATATCATGTCAAGACCTTAATGATGAAGAGAGAACTTGCTAGTGAAACTTGCAGTTAA 291 0.3952 MQCNIIKIGNLVRNKERFVKRRQHLVGPNSSTLKALEILTGCYTLVQGNTVTAMGSFKGLKQVRRVVEDCIQNKMHPVYHVKTLMMKRELASETCS* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1071 96 CDD KH-I_KRR1_rpt2 1 92 - -
Vvi3g1071 96 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 2 89 IPR036612 GO:0003723
Vvi3g1071 96 Gene3D K Homology domain, type 1 1 95 IPR036612 GO:0003723
Vvi3g1071 96 PANTHER HIV-1 REV BINDING PROTEIN 2, 3 1 93 IPR024166 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1071 Vvi-Chr3 13051726 13053208 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1071 K06961 - vvi:104878895 195.667