Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1066 ATGTCTAGACTCCTCCTCCTCTATTTTCTTTTCTTACTCTTGTCCTCTCAGATTCTTTCCTCCTCTTTCTCTTTCTCTAATTCCACCAAACTATGCCCGCATCACCAGACCCTTGCTCTACTCCACCTTAAGCAATCATTCTCTATCAACAATTCTAGTTCTTTGGATTGCCATGCCGTTGGTGTCACGTCTTATCCCAAAACAGAGTCTTGGAAGAAGGGCAGTGATTGCTGCTCATGGGATGGGGTCACATGTGATTGGGTGACAGGCCATGTAATTGAACTGGACCTCAGTTGCAGTTGGCTCTTTGGCACCATCCATTCCAACACTACCCTCTTCCTCCTTCCTCATATACAAAGGCTCAACCTGGCTTTCAACAACTTTAGTGGGTCCTCTATTTCAGTTGGGTTTGGTCGGTTCTCAAGCTTGACGCATCTCAATCTCTCTGACTCTGGATTTTCAGGCCTAATTTCACCAGAAATATCTCACCTCTCCAACTTGGTTTCACTTGATCTCTCTTGGAATTCTGACACAGAATTTGCCCCGCATGGCTTCAATTCTCTGGTTCAAAATTTAACCAAGTTGCAAAAGCTTCACCTTGGAGGTATATCCATCTCTTCAGTTTTTCCTAATTCCTTGCTAAATCGATCTTCTTTGATATCATTACATCTCTCTTCGTGTGGATTGCATGGGAGATTCCCTGACCATGACATTCACCTTCCGAAACTTGAGGTTCTCAACTTATGGAGAAATGATGATCTCAGTGGAAACTTCCCACGATTTAATGAGAACAATTCCCTTACGGAAAATTTAATTTCAATAGGGTTATCTAACAACCATTTTAGTGAGATGATTGATTTGAGTATGAATGAGTTACATGGGCCAATTCCAAGTTCAATATTTAAGCTTGTAAACCTTAGATCTCTTTATCTTTCTTCAAATAACTTGAGTGGCGTTTTGGAGACAAGCAACTTTGGAAAACTTAGAAATCTTATTAATCTTTATCTTTCAAACAACATGCTCTCATTGACCACCTCTAGCAATTCCAACTGCATTTTACCTAAGATTGAGAGCATAGACCTTTCAAACAATAAGATTAGTGGAGTATGGTCGTGGAATATGGGAAAGGATACACTGTGGTACTTGAATCTTTCTTACAACTCGATAAGTGGGTTTGAGATGCTTCCATGGAAAAATGTAGGAATTCTAGATCTTCATTCCAACTTGTTGCAAGGAGCACTTCCAACTCCTCCAAATTCTACATTTTTCTTTTCAGTCTTTCATAACAAATTGAGTGGAGGAATCTCACCTTTGATTTGCAAAGTGAGTTCCATCAGAGTTCTTGATTTGTCTAGTAACAACTTGAGTGGGATGCTTCCTCATTGTTTGGGGAATTTTAGCAAAGATCTATCTGTTTTGAATCTACGAAGGAATCGATTTCATGGCACCATTCCTCAATCATTTTTAAAGGGCAATGTTATCAGGAATCTTGACTTCAATGATAATCGATTGGAAGGCCTAGTACCTCGATCTTTGATCATTTGTAGAAAACTTGAAGTTCTAAACCTTGGGAATAATAAGATAAATGATACATTTCCCCATTGGTTGGGTACTCTTCCAGAGTTGCAAGTCCTTGTTTTGCGCTCTAATAGTTTCCATGGTCATATAGGGTGTTCCAAACTCAAATCCCCATTCATGAGCCTAAGAATCATTGATCTTGCTCACAATGATTTCGAGGGTGACTTGCCTGAAATGTATTTGAGAAGTTTGAAAGTAACAATGAATGTAGATGAAGACAACATGACCAGAAAATATATGGGGGGTAATTATTATGAAGATTCCGTAATGGTGACAATCAAGGGGTTGGAGATTGAATTTGTGAAAATCTTGAATGCTTTCGCAACAATTGATTTATCGAGCAACAAATTCCAAGGAGAGATTCCACAGTCCATTGGCAATCTTAATTCACTTCGAGGGCTCAATTTATCTCATAACAACCTTACAGGACACATTCCATCATCTTTCGGAAATTTGAAGTTGCTTGAATCACTGGACCTCTCTTCAAACAAGCTAATTGGGAGTATTCCTCAACAATTAACAAGTTTAATATTTCTTGAAGTTTTGAATCTTTCCCAAAACCATCTCACTGGATTTATACCTAAAGGTAACCAGTTTGACACTTTTGGAAATGATTCATACAACGGGAACTCAGAGTTGTGTGGATTTCCATTGTCAAAGAAATGCATAGCTGATGAAACACCGGAGCCTTCAAAAGAAGAAGATGCAGAGTTTGAAAATAAATTTGATTGGAAATTCATGTTGGTGGGATATGGATGTGGATTGGTGTATGGATTGTCTCTTGGGGGTATCATTTTTTTAATTGGGAAACCTAAATGGTTTGAAATTCATCGACCTGCTTTCTTTTTGGAGACTCGAGAACTCCAACTCAAGGATGATCTTCAATTGATGTAG 2472 0.3875 MSRLLLLYFLFLLLSSQILSSSFSFSNSTKLCPHHQTLALLHLKQSFSINNSSSLDCHAVGVTSYPKTESWKKGSDCCSWDGVTCDWVTGHVIELDLSCSWLFGTIHSNTTLFLLPHIQRLNLAFNNFSGSSISVGFGRFSSLTHLNLSDSGFSGLISPEISHLSNLVSLDLSWNSDTEFAPHGFNSLVQNLTKLQKLHLGGISISSVFPNSLLNRSSLISLHLSSCGLHGRFPDHDIHLPKLEVLNLWRNDDLSGNFPRFNENNSLTENLISIGLSNNHFSEMIDLSMNELHGPIPSSIFKLVNLRSLYLSSNNLSGVLETSNFGKLRNLINLYLSNNMLSLTTSSNSNCILPKIESIDLSNNKISGVWSWNMGKDTLWYLNLSYNSISGFEMLPWKNVGILDLHSNLLQGALPTPPNSTFFFSVFHNKLSGGISPLICKVSSIRVLDLSSNNLSGMLPHCLGNFSKDLSVLNLRRNRFHGTIPQSFLKGNVIRNLDFNDNRLEGLVPRSLIICRKLEVLNLGNNKINDTFPHWLGTLPELQVLVLRSNSFHGHIGCSKLKSPFMSLRIIDLAHNDFEGDLPEMYLRSLKVTMNVDEDNMTRKYMGGNYYEDSVMVTIKGLEIEFVKILNAFATIDLSSNKFQGEIPQSIGNLNSLRGLNLSHNNLTGHIPSSFGNLKLLESLDLSSNKLIGSIPQQLTSLIFLEVLNLSQNHLTGFIPKGNQFDTFGNDSYNGNSELCGFPLSKKCIADETPEPSKEEDAEFENKFDWKFMLVGYGCGLVYGLSLGGIIFLIGKPKWFEIHRPAFFLETRELQLKDDLQLM* 824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1066 823 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 467 556 - -
Vvi3g1066 823 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 625 748 - -
Vvi3g1066 823 Gene3D Ribonuclease Inhibitor 285 345 IPR032675 -
Vvi3g1066 823 Gene3D Ribonuclease Inhibitor 30 284 IPR032675 -
Vvi3g1066 823 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 269 748 IPR046956 -
Vvi3g1066 823 PRINTS Leucine-rich repeat signature 445 458 - -
Vvi3g1066 823 PRINTS Leucine-rich repeat signature 678 691 - -
Vvi3g1066 823 SMART LRR_typ_2 442 465 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 164 187 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 303 326 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 678 702 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 115 140 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 654 677 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 515 539 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 192 215 IPR003591 -
Vvi3g1066 823 SMART LRR_typ_2 353 375 IPR003591 -
Vvi3g1066 823 Pfam Leucine rich repeat N-terminal domain 34 86 IPR013210 -
Vvi3g1066 823 Pfam Leucine rich repeat 495 551 IPR001611 GO:0005515
Vvi3g1066 823 Pfam Leucine rich repeat 635 691 IPR001611 GO:0005515
Vvi3g1066 823 Pfam Leucine Rich Repeat 445 466 IPR001611 GO:0005515
Vvi3g1066 823 SUPERFAMILY L domain-like 76 409 - -
Vvi3g1066 823 SUPERFAMILY L domain-like 413 745 - -
Vvi3g1066 823 Gene3D Ribonuclease Inhibitor 346 755 IPR032675 -
Vvi3g1066 823 FunFam Cf2-like protein 30 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1066 Vvi-Chr3 12908849 12920590 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1066 5 800 Receptor kinase-like Gene Family AT3G05660 38.739 7.05e-153 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1066 - - vvi:100255139 895.575