Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1063 ATGATTTTGTGCGGGAGTCCTCATCCTTTTTTCGATAGAAAAACATCCATCGTGAGTAAGTACATTAGCGAATTGGATGATTGCGAGAAGCTATTTATTCCAATGCATGACGATTGCCCTGGTCATTGGTATTTATGCGTCATTGACTTCAAACACTTTGATATCCAAATTTTGGATTCATTACGATCGAAGAGTCGAGATGAGTTCCGGTTTAAGAGTGTCAAAATAGTGGTTGAATTTTGTCAAACGTTCTTCAAACTGTATGACATAGGGAAAGATGTCTTCCAATTCTCCATTGATTGGGCTCCTTCAATTCCGACCCAAGATAATGGGTGGGATTGTGGAGTGCATGTCATTAGACATATGCAGAGATTCAAAAATGGTGATTCGATGACGAGCTCCGACTTTTGTAATTCTGTTAAAATACGTCGAGAAATAGCATGTGATTTAGTTTTACACGAGGGAAATAGAGAAAAACAAACCATTGTGGCTATTGTTTGTACAAAGATGTCGACACGAGCAATGAAAAAATTATTATTATGA 543 0.3757 MILCGSPHPFFDRKTSIVSKYISELDDCEKLFIPMHDDCPGHWYLCVIDFKHFDIQILDSLRSKSRDEFRFKSVKIVVEFCQTFFKLYDIGKDVFQFSIDWAPSIPTQDNGWDCGVHVIRHMQRFKNGDSMTSSDFCNSVKIRREIACDLVLHEGNREKQTIVAIVCTKMSTRAMKKLLL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1063 180 ProSiteProfiles Ubiquitin-like protease family profile. 1 125 IPR003653 GO:0006508|GO:0008234
Vvi3g1063 180 SUPERFAMILY Cysteine proteinases 18 151 IPR038765 -
Vvi3g1063 180 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 18 127 - -
Vvi3g1063 180 Gene3D Adenoviral Proteinase; Chain A 10 153 - -
Vvi3g1063 180 Pfam Ulp1 protease family, C-terminal catalytic domain 25 135 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1063 Vvi-Chr3 12883298 12884144 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1063 - - vri:117918048 360.918