Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1061 ATGCATTTGACCAAGCCTCTCAACAAAGATAACCAGACTGCTGAAGAATTATTTGCTGCTAGGAATGAGAGACTCCATCGAGATGCCAAGGAATGGCTAATGCGCACCACTGAGAATTGCACCATTCTTTCTATTTTCATAGCCACTGTTGCCTTTGCAGCAGCCTACACAGTACCAGGAGGTCCTAATCAAGACACCGGTATTCCAATCCTTAACTCTAAACCCTTCTTTGTGGTTTTCATATTAGCTGATGTGTTCTCCCTCACTTTGGCTTTGACATCTGTGGGTATATTTCTCTCCATCCTTACATCCTCATTTCCACTACAAGACTTCAAAACATATCTTTTTAAGAAGCTGACACAGGGAATTACATGTATGATAGCGGTGGCGTTTGGAGCAACAATCGTCCTGATCATGACACATAATTGGAAAAATGCTGTTTGGGGTGTGGTTGGATTTCTTCTGTCCCCATTTTTTTCTCTCATATTCACCTCTACGTTCAGCAATCCTGGGACGTTGCACAGAATCTTCCAAAAATTTTGTTGCAAAATTCCTTAA 558 0.4158 MHLTKPLNKDNQTAEELFAARNERLHRDAKEWLMRTTENCTILSIFIATVAFAAAYTVPGGPNQDTGIPILNSKPFFVVFILADVFSLTLALTSVGIFLSILTSSFPLQDFKTYLFKKLTQGITCMIAVAFGATIVLIMTHNWKNAVWGVVGFLLSPFFSLIFTSTFSNPGTLHRIFQKFCCKIP* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1061 185 PANTHER CASKIN 9 165 - -
Vvi3g1061 185 Pfam Domain of unknown function 30 132 IPR026961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1061 Vvi-Chr3 12818689 12819246 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1061 4 152 Miscellaneous Gene Families AT3G12360 28.947 1.49e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1061 - - vvi:100266905 293.893