Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1058 ATGGCCGACACCAACTCTACCGACCAACAGGAACTCCAAGATCAATTGTTCATTCACTTGATCAGCAAAGACGACAAGAAGGTGACCCAACTCTGCAGTTCTCATCGTGAAGGCCCGCTACAGAGAATTAGTGTTTACAATGACACAGTCCTCCACATGGCCTCTCGCTTCAAACGAAGTAAACTGGTGCGCGACTTACTGGAAATGTTGCCTAAAGAACGCAACCATGAACTTGCCGCTACAAAAAACAACGCCGGCAGCAATATACTCCACGAAGTAGCGGCCAGTGATACTATGAAAGATGTGGCGGAGGAGATGTTGAAGAGAGATTCAGAGTTGCTAATTGCGCCTAACGACTTAGGAGAGACGCCTATTTTTTGTGCAGCCCGCTACGGCCAAACTGAAATGTTTAAGTTTCTGGCTGGGAAAATGGGACTAACGGAACTAAATCCAGAAGAGGGTAAACACTATTTGCAGAGGGATGATAGAACAACAGTTCTTCATATTTCCATCTTGACCGAGTGTTTTGAATTGGCCCATTTTATTGCGGAGAGCTACTCATATTTAATTGAAGAAAGAGATCCAGATTCAATGACTGCTCTTCAATATCTTGCATGCAATCCAACTGCATTTGAAAAGAAGAAAATAAAAACAAGACGAGGATTCATGGAGGAACTCATGATCTCAACAGTACCAACACAAGGACTCATGGAGATACTCATTAAATCCAAGTGGCCCCCCAAGGATAACAGCAAGACAAGTGATGAGAGATGCTATTCACTTCAAGGACTCGTCAAGCTTTTGGTAAAGAATGATACATCATGGCATCCTAGTGTTAATTCTCAAGAAGTTGGCTTAGGTGAGACTAAGGAGTTGGATATAGAAAAGGAAGAAAAAATATCCCAAGAAAAGAAAGGCCAAAATTTCCAAGAAAATGAAGGGCAAAACTACCAAGAAAGTTCAACCAACTACAAGTACAAGAAGAGCGATGAAGCTCCATTATTTTTGGCAACAATATCAAACATTCAAGACATTGTTGAAGAAATACTGGTTTGTCATCCTCAAGCACTTGAGCATACTAATAAGGAGGGAATGAACATACTACATGTGGCAATCCTTTACCGTCATATTGAAATTTTTGATATAGTATCAAAATCTGAATTGCTTGCAAGAAGTCTATTATCAGCTATAGATAAAAAAGGGAACTCCTTACTACATATGGTTGGCCTAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCATCCCAACTACAAAAAGAGTTGCTGTTGTTTAAGAAAGTGAAGTCAGCCTGTAAGATGCATTTGACCAAGCCTCTCAACAAAGATAACCAGACTGCTGAAGAATTATTTGCTGCTAGGAATGAGAGACTCCATCGAGATGCCAAGGAATGGCTAATGCGCACCACTGAGAATTGCACCATTCTTTCTATTTTCATAGCCACTGTTGCCTTTGCAGCAGCCTACACGGTACCAGGAGGTCCTAATCAAGACACCGGTATTCCAATCCTTAACTCTAAACCCTTCTTTGTGGTTTTCATATTAGCTGATGTGTTCTCCCTCACTTTGGCTTTGACATCTGTGGGTAAATTTCTCTCCATCCTTACATCCTCATTTCCACTACAAGACTTCGAAACATATCTTTTTAAGAAGCTGACACAGGGAATTATATGTATGATCCTCTCGGTCTCAATGATGGCGGTGGCGTTTGGAGCAACAATCATCCTGATCATGATGACACATAATTGGAAAAATGCTGTTTGGAGTGTGGTTGGATTTCTTCCTGTCCCCATTTTTTTTCTCTCATATTCACCTCTACGTTCAGCAGTCCTGAGATGTTGCACAGAATCTGCCAAATGTTTTGTTGCAAAATTCCTCAAAGGTGTTGCAATATTCGTCGTTGTCCTCTTTTATTGTTTATATCTAGCTTTCAAAGGACTGTTCTGGACCGTGAAAAAGGCTTTTCGTTGGATTTGTGGGAATAAATCCGATACCCAATCTCCACAGCCAACTGCAGCTCCTATTACTCAAGTTTGA 2064 0.4104 MADTNSTDQQELQDQLFIHLISKDDKKVTQLCSSHREGPLQRISVYNDTVLHMASRFKRSKLVRDLLEMLPKERNHELAATKNNAGSNILHEVAASDTMKDVAEEMLKRDSELLIAPNDLGETPIFCAARYGQTEMFKFLAGKMGLTELNPEEGKHYLQRDDRTTVLHISILTECFELAHFIAESYSYLIEERDPDSMTALQYLACNPTAFEKKKIKTRRGFMEELMISTVPTQGLMEILIKSKWPPKDNSKTSDERCYSLQGLVKLLVKNDTSWHPSVNSQEVGLGETKELDIEKEEKISQEKKGQNFQENEGQNYQESSTNYKYKKSDEAPLFLATISNIQDIVEEILVCHPQALEHTNKEGMNILHVAILYRHIEIFDIVSKSELLARSLLSAIDKKGNSLLHMVGLKRKSQASEKMQSPASQLQKELLLFKKVKSACKMHLTKPLNKDNQTAEELFAARNERLHRDAKEWLMRTTENCTILSIFIATVAFAAAYTVPGGPNQDTGIPILNSKPFFVVFILADVFSLTLALTSVGKFLSILTSSFPLQDFETYLFKKLTQGIICMILSVSMMAVAFGATIILIMMTHNWKNAVWSVVGFLPVPIFFLSYSPLRSAVLRCCTESAKCFVAKFLKGVAIFVVVLFYCLYLAFKGLFWTVKKAFRWICGNKSDTQSPQPTAAPITQV* 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1058 687 MobiDBLite consensus disorder prediction 307 321 - -
Vvi3g1058 687 SUPERFAMILY Ankyrin repeat 21 386 IPR036770 -
Vvi3g1058 687 FunFam Uncharacterized protein 259 480 - -
Vvi3g1058 687 MobiDBLite consensus disorder prediction 298 321 - -
Vvi3g1058 687 Gene3D - 295 473 IPR036770 -
Vvi3g1058 687 SMART ANK_2a 120 149 IPR002110 GO:0005515
Vvi3g1058 687 SMART ANK_2a 363 392 IPR002110 GO:0005515
Vvi3g1058 687 SMART ANK_2a 85 115 IPR002110 GO:0005515
Vvi3g1058 687 SMART ANK_2a 46 76 IPR002110 GO:0005515
Vvi3g1058 687 Pfam Domain of unknown function 472 584 IPR026961 -
Vvi3g1058 687 Gene3D - 6 276 IPR036770 -
Vvi3g1058 687 PANTHER CASKIN 46 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1058 Vvi-Chr3 12780418 12797297 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1058 319 579 Miscellaneous Gene Families AT5G60070 25.000 1.59e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1058 - - vvi:100266905 1353.58