Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1057 ATGGCCGACACCAACCCTATCGACCAACAGGTACTCCAAGCTCAATTGTTCTTTCACTTGATCAGCAAAGACGACAAGAAGGTGACCCAACTCTGCAGTTCTCATCGTGAAGGCCCGCTACAGAGAATTAGTGTTTACAATGACACAGTCCTCCATATGGCCTCTCGCTTCAAACGAAGTAAACTGGTACGCGACTTACTGGAAATGTTGCCTAAAGACTGCAACCATGAACTTGCCGATACAGAAAACAACGCCGGCAGCAATATACTCCACGAAGTAGCCGCCAGTGATACTATGATAGATGTGGCGGAGTTGATGTTGAAGAGAGATCCAGAGTTGCTAATTGCGCGTAACGACTTAGGAGAGACGCCTATTTTTTGTGCAGCCCGCTACGGCCAAACTGAAATGTTTAAGTTTCTGGCTGGGGAAATGAAACTAATGGAACGAAATCCAGAAGATGGTAAACACTATTTGCAGAGGAATGATAGAACCACAGTTCTTCATATTTCCATCTTCACCGAGTGTTTTGAATTGGCCCATTTTATTGCGGAGACCTTTTCCTATTTAATTGAAGAAAGAGATCAAGATTCAATGACTGCTCTTCAATATCTTGCATGCAATCCAATTGCATTTGAAAAGAAGAAAATAAAAACGAGACGAGGATTCATGGAGGAACTCATGATCTCAACAGTACCGACACAAGGACTCATGGAGATACTCATTAAATCCAAGTGGCCCCCCAAGGATAACAGCAAGACAAGTGATGAAAGGTGA 774 0.4341 MADTNPIDQQVLQAQLFFHLISKDDKKVTQLCSSHREGPLQRISVYNDTVLHMASRFKRSKLVRDLLEMLPKDCNHELADTENNAGSNILHEVAASDTMIDVAELMLKRDPELLIARNDLGETPIFCAARYGQTEMFKFLAGEMKLMERNPEDGKHYLQRNDRTTVLHISIFTECFELAHFIAETFSYLIEERDQDSMTALQYLACNPIAFEKKKIKTRRGFMEELMISTVPTQGLMEILIKSKWPPKDNSKTSDER* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1057 257 Pfam Ankyrin repeats (3 copies) 51 141 IPR002110 GO:0005515
Vvi3g1057 257 SUPERFAMILY Ankyrin repeat 19 211 IPR036770 -
Vvi3g1057 257 PANTHER NO MECHANORECEPTOR POTENTIAL C, ISOFORM D-RELATED 37 225 - -
Vvi3g1057 257 Gene3D - 11 243 IPR036770 -
Vvi3g1057 257 SMART ANK_2a 85 115 IPR002110 GO:0005515
Vvi3g1057 257 SMART ANK_2a 46 76 IPR002110 GO:0005515
Vvi3g1057 257 SMART ANK_2a 120 149 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1057 Vvi-Chr3 12643978 12646984 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1057 - - vvi:104878893 516.538