Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1056 ATGTCTCATATTATTAAAAGCAGATGCTATTCACTTCAAGGACTCGTCAAGCTTTTGGTAAAGAATGATAAATCATGGCATGCTAGTGTTAATTCTCAAGAAGTTGGCTTAGGTGAGACTAAGGAGTTGGATATAGAAAAGGAAGAAAAACTATCCCAAGAAAAGAAAGGACAAAATTTCCAAGAAAATGAAGGGCAAAACTACCAAGAAAGTTCAACCAACTACAAGTACAAGAAGAGCAATGAAGCTCCATTATTTTTGGCAACAATATCAAACATTCAAGACATTGTTGAAGAAATACTGGTTTGTCATCCTCAAGCACTTGAGCATATTAATAAGGAGGGAATGAACATACTACATGTGGCAATCCTTTACCGTCATATTGAAATTTTTGATATAGTATCAAAATCTGAATTGCTTGCAAGAAGTCTATTATTAGCTACAGATAACAAAGGGAACTCCTTACTACATATGGTTGGCCTAAAAAGAAAAAGTCAAGCTAGTGAAAAGATGCAAAGCCCTGCATCCCAACTACAAAAAGAGTTGCTGTTGTTTAAGGGTACTGAAGTGAAGTTGATTCTCTATCATGGGATGTTGAATCAACTTCAAAAGTGA 615 0.3512 MSHIIKSRCYSLQGLVKLLVKNDKSWHASVNSQEVGLGETKELDIEKEEKLSQEKKGQNFQENEGQNYQESSTNYKYKKSNEAPLFLATISNIQDIVEEILVCHPQALEHINKEGMNILHVAILYRHIEIFDIVSKSELLARSLLLATDNKGNSLLHMVGLKRKSQASEKMQSPASQLQKELLLFKGTEVKLILYHGMLNQLQK* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1056 204 MobiDBLite consensus disorder prediction 48 72 - -
Vvi3g1056 204 FunFam Uncharacterized protein 10 203 - -
Vvi3g1056 204 MobiDBLite consensus disorder prediction 58 72 - -
Vvi3g1056 204 SUPERFAMILY Ankyrin repeat 75 157 IPR036770 -
Vvi3g1056 204 Gene3D - 10 173 IPR036770 -
Vvi3g1056 204 PANTHER CASKIN 49 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1056 Vvi-Chr3 12633129 12638121 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1056 - - vvi:104878893 351.673