Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1034 ATGAAATCGCCGCTGCCAAAAAACGAGGTAAGCCCTTTGATTCCAGGTATCTTTCATGGCTGCAATGCCACTGTCTTCGCTTATGAGGCAACTGGCAGTGGGAAAACCTACACCATGCAAGGCACTGATGAACTTCCAGGTCTAATGCCACTTACCATGTTAGCAGTTCTAACTATGTGTTGGAGCACAACCAGCACTGCAGAGATGTCATATTATGAGGTCTATATGGACGGATGTTATGATCTGTTGGAAGTCAAAGCAAAGGAAATTGCAATATTGGATGACAAAGGTGGGCAGATTCATCTAAAGGGCTTATCTCGTGTCCCAATAAGTTCCATGTCTGAATTTTATGAGGTCTTCTCTTGTGGAATTCAACGCAGAAAAGTTGCACACACAGGGCTTAATGATGTCTCTAGCAGAAGCCATGGAGTCCTTGTGATATCTGTTTCCACTCCTTGTGATGATGGCTCCAGTGCTGTTGTTACTTGGAAGTTGAACCTCATCGATTTAGCAGGTAATGAAGACAACAGAAGAACCTGCAATAAAGGGATACGTCTCCAAGAGAGTGCTAAGATCAACCAGTCCTTATTTGTCTTATCAAATGTGATTTATGCCTTTAACAATAACAGGCCCCGAGTACCATACAGAGAAAACAAACTGACCCGGATACTGCAAGATTCCCTTGGAGGAACCAGCCGTGCATTGATGGTTGCTTGTCTAAATCCAGGAGAGTACCAAGAACCTGTTCATACGGTCAGCTTGGCTGCACGGTCGCGCCACATATCTAACTCTGTTCCATCAGCTCAAAAACAAGATACTCCAAATGTTAAAGTTGACATGGAGGCGAAATTGCGTGCCTGGCTTGAATCAAAAGGAAAGACAAAGAGTGCACAAAGAATGAAGGCATTTGGTTCACCTCTTATGAGCAAAGCTTCTAGTTCTTTGAGCTCTTTGAAGAAGCCCTGTCCATGTCACAGCTCCACAAAAGCAAAGGCTATTACAAACCAAGGTGCTTCTAATGCTAAGGAAAGGGTTCTTTCTGTGCAGCACAGAAATTTATTCTACAATGGAGATTCAGTTGATTCTGGCACAGAGCGTTTCAACTTTGCTGCTGAGAACAATACCAATAATACAGAAGAAGAGTTCAAGGCTGGTGGGGATGGGAGTGCCTCAGAAACAAATACAATTTTACCTGATGATGCATTGGCAAATGACAAGAAGATTCTGAAGTTGTATACTTGGAAGGTGTCCCCCACTCACGTTGAGGCTTTTAGATATAACAGGGAGAAGACAAGCATGGAAGAGTTCTCTCCCGTTTCACTCAAAAAGAATAATGAAGTGATTTTTGAAGAAATAAGTGAAGAGGAGAAAGTAGGGATCTCTATGAAGCTTTGCAAGAGCTGTACGGGCAGCTTCTCGATGAATTAA 1428 0.43 MKSPLPKNEVSPLIPGIFHGCNATVFAYEATGSGKTYTMQGTDELPGLMPLTMLAVLTMCWSTTSTAEMSYYEVYMDGCYDLLEVKAKEIAILDDKGGQIHLKGLSRVPISSMSEFYEVFSCGIQRRKVAHTGLNDVSSRSHGVLVISVSTPCDDGSSAVVTWKLNLIDLAGNEDNRRTCNKGIRLQESAKINQSLFVLSNVIYAFNNNRPRVPYRENKLTRILQDSLGGTSRALMVACLNPGEYQEPVHTVSLAARSRHISNSVPSAQKQDTPNVKVDMEAKLRAWLESKGKTKSAQRMKAFGSPLMSKASSSLSSLKKPCPCHSSTKAKAITNQGASNAKERVLSVQHRNLFYNGDSVDSGTERFNFAAENNTNNTEEEFKAGGDGSASETNTILPDDALANDKKILKLYTWKVSPTHVEAFRYNREKTSMEEFSPVSLKKNNEVIFEEISEEEKVGISMKLCKSCTGSFSMN* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1034 475 Gene3D Kinesin motor domain 7 304 IPR036961 -
Vvi3g1034 475 PRINTS Kinesin heavy chain signature 20 41 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 PRINTS Kinesin heavy chain signature 213 234 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 PRINTS Kinesin heavy chain signature 132 149 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 PRINTS Kinesin heavy chain signature 164 182 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 ProSiteProfiles Kinesin motor domain profile. 1 261 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 Pfam Kinesin motor domain 8 261 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 SMART kinesin_4 2 269 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vvi3g1034 475 FunFam Uncharacterized protein 39 303 - -
Vvi3g1034 475 PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED 8 391 IPR027640 GO:0003777|GO:0007018
Vvi3g1034 475 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 291 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1034 Vvi-Chr3 12160726 12163148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1034 13 261 Miscellaneous Gene Families AT5G06670 33.333 7.58e-38 145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1034 K10403 - vvi:100261269 705.286