Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1027 ATGAGTACTGTTCGATGGCTGCTTCAGATCTCCTTATTACTATGGCTAAGCAGAGGATTAGCAGCAACTCAAGGGAAGTCTGGTTGTCTAGAGACGTGTGGAGACGTTGACATTCCATACCCCTTCGGAATTGGATCTGCTGGTTGCTACTTTGATGAATGGTTCGAAGTAACTTGCAACAACTCTATCCACCCTCACATTCCCAAGCCTTTCCTGAAAATACTGAATCTGGAGGTGCTGAATGTTTCATTAAATCGTAGCACCATCCGGGTAAACAACCCAGTACTCGGTTATATGAATTGTTCCGGCAAACCGTCAAACGACGCACAGTCGTGGGAGGGAGGCCCCTTTTCATTCTCTGACACCTACACTAGATTCACTGCTGTGGGTTGCAGCACCCTGGCCTACATCACGCAGAATGATTCAGTAATCGGGGGATGCATGTCCTACTGCAAACAGGGCACAACTGCGGCAAAAAATGGCAGCTGCTATGGCTTGAAGTGTTGCCAAACCCAATTCCCTCCGGGCCTCCAGTACTTCACTACAATGTTAGGCGACTTTCCTAGTAATAGTGATGATCAGGACGAATGCAAATACGCGTTCATGGTGGACCAAGAATGGTTCATCTCAATGGAACAAGATCCAGATAAGGTGAAAGATGTGGGACATGCTCCAGCAGTGCTGGACTGGCGGATATACAACGCAACATGCAAGTCAGTCGGATGGAATAATACCTCCACCTCAAACACATCCACAAGTTTTTGTGGCGCGAATGCCATCTGTTCAGCTGACACTCAAACCCCAAGTCTCACCTGCCGTTGTCCCCGGGGATATGAAGGCAACCCTTATCTTACCGAAGGATGTGAAGGTACAAATTATAAGCTATATGAGAATGGGACGGTATGCATTAATAGGAATGCAAATTTTTCATGCTATCCGGTCGATAAGTTGATTGTTGATCCACGTCCTCGAAGAATGGTGTTGCCAGGTATGTTGGTATCTTCTTTCTTTTTCTTTCCTCCACTCCCCCAACTACAAATTAGAAAGAAAACAATATCCAATTTCAGAACAATATCATAG 1080 0.4583 MSTVRWLLQISLLLWLSRGLAATQGKSGCLETCGDVDIPYPFGIGSAGCYFDEWFEVTCNNSIHPHIPKPFLKILNLEVLNVSLNRSTIRVNNPVLGYMNCSGKPSNDAQSWEGGPFSFSDTYTRFTAVGCSTLAYITQNDSVIGGCMSYCKQGTTAAKNGSCYGLKCCQTQFPPGLQYFTTMLGDFPSNSDDQDECKYAFMVDQEWFISMEQDPDKVKDVGHAPAVLDWRIYNATCKSVGWNNTSTSNTSTSFCGANAICSADTQTPSLTCRCPRGYEGNPYLTEGCEGTNYKLYENGTVCINRNANFSCYPVDKLIVDPRPRRMVLPGMLVSSFFFFPPLPQLQIRKKTISNFRTIS* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1027 359 PANTHER OSJNBA0016N04.9 PROTEIN 7 303 - -
Vvi3g1027 359 Pfam Wall-associated receptor kinase galacturonan-binding 29 92 IPR025287 GO:0030247
Vvi3g1027 359 Pfam Wall-associated kinase 161 252 IPR013695 GO:0004674|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1027 Vvi-Chr3 11875119 11876983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g1027 2 342 Receptor kinase-like Gene Family AT1G16120 30.319 8.98e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1027 - - vvi:100257661 696.041