Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1025 ATGTCCTTCCACTTTCAACAGTCTGATCCAATGGCCACTGTTGGCGGCGCCGGAAGCCTATCTCTGTTTGATACTGGTATTGGAATGACCAAGGACGAGCTCATTGACTGTCTTGGAACTATAGCTCAGAGTGGTACTTCAAAATCCTTGAAGGCTCTTGAGGAAAATCAGGATCTCGGGGCTGATAATGGGTTGATTGGTCGATTTGGTGTTGGGTCCTATTCTGCATTTCCGGTCGCTGAGAAAATGACAGTGTCAACGAAGAGCCTCAAAGCCTGTTTGACAAAGCTGCTCCAAAATCCCGAGAGTGGCTATAATAGCCAAATGTGA 330 0.4697 MSFHFQQSDPMATVGGAGSLSLFDTGIGMTKDELIDCLGTIAQSGTSKSLKALEENQDLGADNGLIGRFGVGSYSAFPVAEKMTVSTKSLKACLTKLLQNPESGYNSQM* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1025 109 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 18 89 - -
Vvi3g1025 109 PRINTS 90kDa heat shock protein signature 37 54 IPR020575 -
Vvi3g1025 109 PRINTS 90kDa heat shock protein signature 66 88 IPR020575 -
Vvi3g1025 109 PRINTS 90kDa heat shock protein signature 19 36 IPR020575 -
Vvi3g1025 109 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 16 92 IPR036890 -
Vvi3g1025 109 Gene3D - 10 105 IPR036890 -
Vvi3g1025 109 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 18 90 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1025 Vvi-Chr3 11864171 11864613 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1025 K09487 - vri:117931994 135.191