Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1020 ATGGCTAACAAATCAAGGTACGGTGTCAAAGCTTTACCAGCTGCAAGCTCTTCCAGCGAAGTTGTGCCACATAAAGAGAAGAGGGTTCCGATCGTTGACGAAGTCAACGTGGTGGGGATTCAAGACAGTGCAAAAAACGTGAAGCAAATGCTGCTTAATGGAGAGATGCGGAGAGCTGTGGTGTCCATCGTGGGCATGGGTGGCTTGGGAAAGAGAACCCTTGCTAAGAAAGTTTATAATGATAATGATATCCAGCAATACTTTGATTGTCATGCTTGGAGTTATGTCTCTCAAGAGTATGCAATCAAGGAGCTTTTGCTAGGCATTGCGGATTGTGTTATCATTCTATATAAAAAGCAAAGGAGTAAAATGCAAAAAAGTGTGAGTTAG 390 0.4282 MANKSRYGVKALPAASSSSEVVPHKEKRVPIVDEVNVVGIQDSAKNVKQMLLNGEMRRAVVSIVGMGGLGKRTLAKKVYNDNDIQQYFDCHAWSYVSQEYAIKELLLGIADCVIILYKKQRSKMQKSVS* 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1020 129 Pfam NB-ARC domain 42 111 IPR002182 GO:0043531
Vvi3g1020 129 Gene3D - 18 129 IPR027417 -
Vvi3g1020 129 PANTHER TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 13 HOMOLOG 30 112 - -
Vvi3g1020 129 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 120 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1020 Vvi-Chr3 11793946 11794335 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1020 - - vvi:100257205 204.912