Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1013 ATGGGGGCTTTGGATGAGGGGCACTTTAGTGTGGAACTGGAGGATGGCGTGAATGTGGAGGTGGGATTTGAGCCAGAGACTCTACCCATTGAGGAGGCTGTTAAAGTGCTTCTGCAGGGTTTGGGTGAGGATATCAATAGGGAAGGCATCCGTAAGACCCCTGCCCGTGTTGCCAAGGCCCTTTGTGAAGGAACTAGAGGTTACAGGCAAAAGGCAAAAGACATTGTTCAAGGTGCCTTATTCCCTGAAGCTGGTTTGGATGAGGGAGTTGGTCATGCAGGAGGAGTGGGCGGGCTCGTGATTGTTCGAGATCTTGATCTCTTCTCATACTGTGAATCTTGTTTGCTTCCATTCCAGGTAAAGTGTCATGTGGGTTATGTCCCATCAGGGCAACAGGTTGTGGGCTTAAGTAAGCTTTCTCGGGTAGCTGATGTTTTTGCAAAACGACTCCAAGATCCACAGCGTCTCGCAGATGAAGTGTGTTCTGCTTTGAACCATGGGATCAAGCCTACAGGTGTTGCTGTTGTACTCCAGTGTTTACATATTCATTTCCCGAATTTAGAGTTGGGCTTCCTTGATTCAACCCATCAAGAGTGGGTCAAAGTATCGGTTTGTTCCGGTAAAGGCCTTTTTGAAAATTCGAAGGCCACCATTTGGAGCGATTTTTTAAGTCTCCTGAAATTCCGAGGCATGAATGTGGAGAAAACCCGTACCAAAGATTCCACAAGTCCATGTTGGTGCCCATCCCAGTCCTCCTCTGCTTTAATTCCATGCAAGATAGAACTTGTCCACCAAATGGATGCTGCAGTAACTTCAATTCTCAAGTCTTTGGGTGAAGACCCATCGAGGAAAGAGCTGGTACGAACCCCTAATCGTTATGTGAGGTGGCTGATGAACTTTGAAAAAGCTAACTTGGAGCTGAAGCTAAATGGGTTTGTTTGTGGTAAGATGGATCCTTTTCATCCCAGTTGCAACGAGGCAGAGATGCAGTCTGAGCTGAACTTGGCATTCTGGTCTCTGTGCGAGCATCATTTACTTCCCTTCCATGGTGTTGTGCATATAGGCTACTTCTGCACCAAAGGAACCAATCCCATTGCAAGATCCATTTTAGAGTCAATAGTACATTTCTATGGCTTCAAGCTCCAAGTACAGGAAAGGCTTACCAGGCAGGTTTCTGAGACTGTTTCATCTCTGCTAGGTGGAGATGTGATAGTGGTGGTGGAAGCTAGTCACTCGTGCATGGTCTCCAGAGGAATCGAGAAGTTAGGAAGTAATACTGCTACAATGGCTCTGCTTGGCCGGTTTTCAACCGATGCTGCTGCAAAAAACATGTTTTTGCAGAGCATTCAAAACACTTCAACTTCTTGA 1368 0.4656 MGALDEGHFSVELEDGVNVEVGFEPETLPIEEAVKVLLQGLGEDINREGIRKTPARVAKALCEGTRGYRQKAKDIVQGALFPEAGLDEGVGHAGGVGGLVIVRDLDLFSYCESCLLPFQVKCHVGYVPSGQQVVGLSKLSRVADVFAKRLQDPQRLADEVCSALNHGIKPTGVAVVLQCLHIHFPNLELGFLDSTHQEWVKVSVCSGKGLFENSKATIWSDFLSLLKFRGMNVEKTRTKDSTSPCWCPSQSSSALIPCKIELVHQMDAAVTSILKSLGEDPSRKELVRTPNRYVRWLMNFEKANLELKLNGFVCGKMDPFHPSCNEAEMQSELNLAFWSLCEHHLLPFHGVVHIGYFCTKGTNPIARSILESIVHFYGFKLQVQERLTRQVSETVSSLLGGDVIVVVEASHSCMVSRGIEKLGSNTATMALLGRFSTDAAAKNMFLQSIQNTSTS* 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1013 455 FunFam GTP cyclohydrolase 1 94 229 - -
Vvi3g1013 455 Gene3D - 93 229 IPR043133 -
Vvi3g1013 455 Gene3D - 28 76 IPR043134 -
Vvi3g1013 455 Gene3D - 320 452 IPR043133 -
Vvi3g1013 455 PANTHER GTP CYCLOHYDROLASE I 25 182 IPR001474 GO:0003934|GO:0046654
Vvi3g1013 455 Gene3D - 259 304 IPR043134 -
Vvi3g1013 455 FunFam GTP cyclohydrolase 1 320 451 - -
Vvi3g1013 455 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 23 184 - -
Vvi3g1013 455 Pfam GTP cyclohydrolase I 30 182 IPR020602 -
Vvi3g1013 455 Pfam GTP cyclohydrolase I 267 449 IPR020602 -
Vvi3g1013 455 SUPERFAMILY Tetrahydrobiopterin biosynthesis enzymes-like 263 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1013 Vvi-Chr3 11515795 11518626 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1013 K01495 - vvi:100244016 901.738