Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1010 ATGGGTTTGATGAATGTTCTCAAATTCTCAGCTGCATGCTTTGATCTTCTTGGTTGGCCTCTGTTTGCACTGGGTTATCCTCTGATACCATTCTGGCCTTACATAAAGCTGATGGTCATCTGCTGGCTGGTGATACCGCATTTTGATGGTTCCTATTATATCTATCAATACCTAGTTCATCCACGCTTGTCCATGGATCCACAAGTTGTCATGAATTGGCTCTTCAATGAATCAAAAAAGAAGTTTCATAGCAGAGAAAACTTTCTTGTTTCAGCAGACCAATATATTAAGGAGAAGGGACCTGAAGCTTTGGAGAAACTACTTGCAAGGAAGTTGAGGAGCACAAAGCCTAATGTTGAAGTGAAAGAGATCAAAGGACCTGCAGCACCGGAGAAAAAAGGGGAACAGTGGAAGTGTGAAGAGCCTAATGTTGCAGAAAAGGAGATCCAAGTAGTCAAAGTAACAGACATAAAAAATGGGGGGGATGGAGCAAAGAGGTGTGAAGGTGCAAATGGTGCTAAGAAGGAGATCAAAGTGATGGAAGTAACACAGAGAACATTTGGTGATACAGCACAGTGGGTTGAACGATCAGAGATAAATCTTGGTGAAACTAGAAGTAATACAACCTGTGCCGTGGAGATAAAAGAAAGGGCAGCAGCACTGGTGGCTGCAGAAATTGAGGCATGTAGAGACGATAGAACCCCCAAGATACCTCTTCATGAGAAAGTCCAGAAAGAGTGGGCTTGTGCTGTGTGCCAGTTCACAACCCAAACTGAAGCGACCTTCAATTCCCACCTTCAAGGGAAGAGACATCAGGCCACTTCTGAGCAGTTGACAGCCAAAAACCAGGCAACCAAAACCAATTGTTCCCCATCTGCTTCAAAGGCCAAGAAATCTGATCAGTCCACCAAAGAGGAGCAACCGAAGTGTCCTTCCAACAATCTGAATTCCAAAAACAATGGAATCTCAGCTGCTTCAATAGTGAAGAAACCTGACGAGACCAAAGATGATGAGCAACAAAAGTGTGCATCCAGCAATGGACCAAACCAGAAGAATAACAAAAAGCAAGAGGAGAAGGTGCTAGTTCTTGAGACCAATGAGCAAGGCCATCAGAATAATTTTGATCCACGATCCCACATTTATTTTGGGTCTCACAAGTTTCAAATTTGCAGAAAAATGAAAGATGTTTGA 1191 0.4307 MGLMNVLKFSAACFDLLGWPLFALGYPLIPFWPYIKLMVICWLVIPHFDGSYYIYQYLVHPRLSMDPQVVMNWLFNESKKKFHSRENFLVSADQYIKEKGPEALEKLLARKLRSTKPNVEVKEIKGPAAPEKKGEQWKCEEPNVAEKEIQVVKVTDIKNGGDGAKRCEGANGAKKEIKVMEVTQRTFGDTAQWVERSEINLGETRSNTTCAVEIKERAAALVAAEIEACRDDRTPKIPLHEKVQKEWACAVCQFTTQTEATFNSHLQGKRHQATSEQLTAKNQATKTNCSPSASKAKKSDQSTKEEQPKCPSNNLNSKNNGISAASIVKKPDETKDDEQQKCASSNGPNQKNNKKQEEKVLVLETNEQGHQNNFDPRSHIYFGSHKFQICRKMKDV* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1010 396 Pfam TB2/DP1, HVA22 family 28 61 IPR004345 -
Vvi3g1010 396 MobiDBLite consensus disorder prediction 306 324 - -
Vvi3g1010 396 PANTHER OS06G0651300 PROTEIN-RELATED 180 358 - -
Vvi3g1010 396 Gene3D Classic Zinc Finger 231 277 - -
Vvi3g1010 396 MobiDBLite consensus disorder prediction 265 297 - -
Vvi3g1010 396 MobiDBLite consensus disorder prediction 265 360 - -
Vvi3g1010 396 Pfam Zinc-finger of C2H2 type 247 271 - -
Vvi3g1010 396 SUPERFAMILY beta-beta-alpha zinc fingers 228 283 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1010 Vvi-Chr3 11437388 11441895 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1010 - - vvi:100854587 777.319