Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1006 ATGGGTTTGATGAATGTTCTCAAATTCTCAGCTGCATGCTTTGATCTTCTTGGCTGGCCTCTGTTTGCACTGGGTTATCCTCTATGTGCTTCAATTCGGGTAATTGAGACTAACTCAATCTCAGACGTTCGGAAGTTGGTGGCGTATTGGGTTCTATTTTCCTTGGTTTCACTCTTTGATCATACTTTTGCCAAGCTCCTTGAATGGGTACCATTCTGGCCTTACATAAAGCTGATGGTCATCTGCTGGCTGGTGATACAGCAGTTTGATGGTTCATATTATGTCTATCAACACCTAGTTCAGCCATGCTTGTCCATGGATCCACAAGCTGTCATGAACTGGCTCTTCAATGAATCAAAAAAGAAGTTTCATAGCAGAGAAAACTTTCTTGTTTCAGCAGACCGATATATTAAGGAGAATGGACCTGAAGCTTTGGAGAAACTACTTTCTAGGAAGTTGAGGAGCGCAAAGCCTAATGTTGAAGTGAAAAAGATCAAAGCACCTGCAGCACCGGAGAAAAAAGGGGAACAGTGGAAGTGTGAAGAGCCTAATGTTGCTCAAAAGGAGATCCAAGTTGTCAAAGTAACAGAGATAAAAAATGGGGGGGATGGAGCAAAGAGGTGTGAATGGCCTAATGCTGCTAAGAAGGAGGTCAAAGTGACAGAAGTAACACACAGAACATTCGGTGGTACAGCACAGTGGGTTAAACGAACAGAGATAAATCTTGGTGAAACTAGAAGTAATACAACTTGTGCTGTGGAGATAAAAGAAAGGGCAGCGGCACTGGTGGCTGCAGAAATTGAGGCATGTAGAGACGATAGAACCCCCAAGATACCTCTTCATGAGAAAGTCCAGAAAGAGTGGGCTTGTGCTGTATGCCAGGTCACAACCCAAAGTGAAGCGACCTTCAATTCCCACCTTCAAGGGAAGAGACATCAGGCCACTTCTGAGCAGCTGAGAGCCAAAAACCAGGCAACCAAAACCAATTGTTCCCCATCTGCTTCAATGGCCAAGAAATCTGATCAGTCCACCAAAGAGGAGCAACCGAAGTGTACTTCCAACAATCTGAATTCCAAAAACAATGGAATCTCAGCTGCTTCAACAGTGAAGAAACCTGATGACACCAAAGATGATGAGCGACAAAAGTCTGCATCTAGCAATGAACCGAACCAGAAGAATAACAAAAAGCAAGAGGTACAGACCAATGAGCAAGGCCATCAGAAGAACTTAAAGCAAACTGGCGATGGAATGAAAGAGTTGAGATTATGCTGCAATATCTGTAATGTAAGCTGCACAAGTGAGCTTGACATGGCCTCTCATCTCAATGGATGGAGGCACTTTAATATGATAAAGGAGGCGTCTGAATTATGGTGCAGTAACTGCAATGTAAGGTGCAACAGTGAGGCTGTCATGGCCTCTCACCGAAATGGGAGGAGGCACTTGAAGCAGCTGAAGGAACGGTCGGGATTATAG 1473 0.4426 MGLMNVLKFSAACFDLLGWPLFALGYPLCASIRVIETNSISDVRKLVAYWVLFSLVSLFDHTFAKLLEWVPFWPYIKLMVICWLVIQQFDGSYYVYQHLVQPCLSMDPQAVMNWLFNESKKKFHSRENFLVSADRYIKENGPEALEKLLSRKLRSAKPNVEVKKIKAPAAPEKKGEQWKCEEPNVAQKEIQVVKVTEIKNGGDGAKRCEWPNAAKKEVKVTEVTHRTFGGTAQWVKRTEINLGETRSNTTCAVEIKERAAALVAAEIEACRDDRTPKIPLHEKVQKEWACAVCQVTTQSEATFNSHLQGKRHQATSEQLRAKNQATKTNCSPSASMAKKSDQSTKEEQPKCTSNNLNSKNNGISAASTVKKPDDTKDDERQKSASSNEPNQKNNKKQEVQTNEQGHQKNLKQTGDGMKELRLCCNICNVSCTSELDMASHLNGWRHFNMIKEASELWCSNCNVRCNSEAVMASHRNGRRHLKQLKERSGL* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1006 490 SMART c2h2final6 456 480 IPR013087 -
Vvi3g1006 490 SMART c2h2final6 288 312 IPR013087 -
Vvi3g1006 490 SMART c2h2final6 422 446 IPR013087 -
Vvi3g1006 490 MobiDBLite consensus disorder prediction 304 412 - -
Vvi3g1006 490 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Vvi3g1006 490 MobiDBLite consensus disorder prediction 347 368 - -
Vvi3g1006 490 SMART ZnF_U1_5 419 453 IPR003604 GO:0003676|GO:0008270
Vvi3g1006 490 SMART ZnF_U1_5 454 487 IPR003604 GO:0003676|GO:0008270
Vvi3g1006 490 SMART ZnF_U1_5 285 319 IPR003604 GO:0003676|GO:0008270
Vvi3g1006 490 PANTHER OS06G0651300 PROTEIN-RELATED 237 452 - -
Vvi3g1006 490 MobiDBLite consensus disorder prediction 386 411 - -
Vvi3g1006 490 Pfam Zinc-finger of C2H2 type 423 443 - -
Vvi3g1006 490 Pfam Zinc-finger of C2H2 type 457 480 - -
Vvi3g1006 490 Pfam Zinc-finger of C2H2 type 288 312 - -
Vvi3g1006 490 SUPERFAMILY beta-beta-alpha zinc fingers 269 324 IPR036236 -
Vvi3g1006 490 MobiDBLite consensus disorder prediction 370 385 - -
Vvi3g1006 490 SUPERFAMILY beta-beta-alpha zinc fingers 454 486 IPR036236 -
Vvi3g1006 490 MobiDBLite consensus disorder prediction 304 339 - -
Vvi3g1006 490 Gene3D Classic Zinc Finger 377 450 - -
Vvi3g1006 490 Gene3D Classic Zinc Finger 272 318 - -
Vvi3g1006 490 Gene3D Classic Zinc Finger 451 487 - -
Vvi3g1006 490 SUPERFAMILY beta-beta-alpha zinc fingers 408 451 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1006 Vvi-Chr3 11383713 11402018 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1006 - - vvi:100245618 962.214