Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1004 ATGGGTTTTATGAATGTTCTCAAGTTCTCAGCTGCATGCTTTGATATTCTTGCCTGGCCTCTATTTGCACTGGGTTATCCTCTATGTTCTTCAATTCGGGCAATTGAGACTAACTCAATCTCAGACTTTCGGAAGTTGGTGGCGTATTGGGTTCTATTTTCCTTGATTTCACTCTATGATCATGCTTTTTCCAAGCTCCTTGAATGGGTACCATTCTGGCCTTACATAAAGCTGATGGTCATCTGCTGGCTGGTGATACCGCAGTTTGATGGTTCATATTATGTCTATCAACACCTAGTTCATCCATGCTTGTCCATGGATCCACAAGTTGTCATGAATTGGCTCTTCAATGAATCAAAAAAGAAGTTTCATAGTAGAGAAACCTTTCTTGTTTCAGCAGACCAATATACTAAGGAGAATGGACCTGAAGCTTTGGAGAAACTACTTGCTAGGAAGTTGAGGAGCACAAAGCCTAATGTTGAAGTGAAAGAGATCAAAGCACCTGCAGCACCGGAGAAAAAAGGGGAACAGTGGAAGTGTGAAGAGCCTAATGTTGCTGAAAAGGAGATCCAAGTAGTCAAAGTAACAGAGATAAAAAATGGGGGGGATGAAGCAAAGAGGTATGAATGGCCTAATGCTGCTAAGGAGGAGGTCAAAGTGACAGAAGTAACACAGAGAACATTTGGTGGTACAGCACAGTGGGTTAAACAAACAGAGATAAATCTTGGTGAAACTAGAAGTAATACAACCTGTTCTGTGGAGATAAAAGAAAGGGCAGCAGTACTGGTGGCTGCAGAAATTGAGGCATGTAGAGACGATAGAACCCCCAAGATACCTCTTCATGAGAAAGTCCAGAAAGAGTGGGCTTGTGCTGTATGCCAGTTCACAACCCAAACTGAAGCGACCTTCAATTCCCACCTTCAAGGGAAGAGACATCAGGCCATTTCTGAGCAGCTGAGAGCCAAAAACCAGGCAACCAAAACCAATTGTTCCCCATCTGCTTCAATGGCCAAGAAATCTGATCAGTCCACCAAAGAGGAGCAACCAAAGTGTACTTCCAACAATCTGAATTCCAAAAACAATGGAATCTCAGCTGCTTCAACAGTGAAGAAACTTGATGAGACCAAAGATGATGAGCAACAAAAGTCTGCATCTAGCAATGGACCAAACCAGAAGAATAACAAAAAGCAAGAGGTACAGACCAATGAGCAAGGCCATCAGAAGAACTCAAGGCAAACTGGTGATGGAATGAAAGAGTTGAGATCATGGTGCAATATCTGTAATGTAAGCTGCACAAGGGAGCTTGACCTGGCCTCTCATCTCAATGGAAGGAGGCACTTTGATAGGATAAAGCAGCTGTCTGAATTATGGTGCAGTAACTGCAATGTAAGGTGCAACAGTGAGGTTGATATGGCCTCTCACCGAAATGGGAGGAGGCACTTGGAGCAGCTGAAGGAACAGTTAGGATTATGGTGCAGTATCTGTAGTGTGAGTTGCAACAGCAAGGTGGACATGGATTCTCACCTAAATGGGAAGAGTCACTCGGATCAGATCAAGGACCAGTTAAGATTATGGTGTGGGGCATATTGTGTTAGGAGGAGCTGGAATGGGTTCAAATCAGGAATTAAGACCCAGTTCCAAGACATGGAAAGTGTCTTTAGATTATGTTAA 1671 0.4333 MGFMNVLKFSAACFDILAWPLFALGYPLCSSIRAIETNSISDFRKLVAYWVLFSLISLYDHAFSKLLEWVPFWPYIKLMVICWLVIPQFDGSYYVYQHLVHPCLSMDPQVVMNWLFNESKKKFHSRETFLVSADQYTKENGPEALEKLLARKLRSTKPNVEVKEIKAPAAPEKKGEQWKCEEPNVAEKEIQVVKVTEIKNGGDEAKRYEWPNAAKEEVKVTEVTQRTFGGTAQWVKQTEINLGETRSNTTCSVEIKERAAVLVAAEIEACRDDRTPKIPLHEKVQKEWACAVCQFTTQTEATFNSHLQGKRHQAISEQLRAKNQATKTNCSPSASMAKKSDQSTKEEQPKCTSNNLNSKNNGISAASTVKKLDETKDDEQQKSASSNGPNQKNNKKQEVQTNEQGHQKNSRQTGDGMKELRSWCNICNVSCTRELDLASHLNGRRHFDRIKQLSELWCSNCNVRCNSEVDMASHRNGRRHLEQLKEQLGLWCSICSVSCNSKVDMDSHLNGKSHSDQIKDQLRLWCGAYCVRRSWNGFKSGIKTQFQDMESVFRLC* 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1004 556 MobiDBLite consensus disorder prediction 321 415 - -
Vvi3g1004 556 SUPERFAMILY beta-beta-alpha zinc fingers 409 453 IPR036236 -
Vvi3g1004 556 Gene3D Classic Zinc Finger 272 318 - -
Vvi3g1004 556 Gene3D Classic Zinc Finger 488 521 - -
Vvi3g1004 556 Gene3D Classic Zinc Finger 452 487 - -
Vvi3g1004 556 Gene3D Classic Zinc Finger 370 451 - -
Vvi3g1004 556 MobiDBLite consensus disorder prediction 347 368 - -
Vvi3g1004 556 Pfam TB2/DP1, HVA22 family 27 103 IPR004345 -
Vvi3g1004 556 Pfam Zinc-finger of C2H2 type 491 514 - -
Vvi3g1004 556 Pfam Zinc-finger of C2H2 type 288 312 - -
Vvi3g1004 556 Pfam Zinc-finger of C2H2 type 423 446 - -
Vvi3g1004 556 Pfam Zinc-finger of C2H2 type 457 480 - -
Vvi3g1004 556 SUPERFAMILY beta-beta-alpha zinc fingers 269 324 IPR036236 -
Vvi3g1004 556 SMART ZnF_U1_5 489 521 IPR003604 GO:0003676|GO:0008270
Vvi3g1004 556 SMART ZnF_U1_5 285 319 IPR003604 GO:0003676|GO:0008270
Vvi3g1004 556 SMART ZnF_U1_5 454 487 IPR003604 GO:0003676|GO:0008270
Vvi3g1004 556 SMART ZnF_U1_5 419 453 IPR003604 GO:0003676|GO:0008270
Vvi3g1004 556 MobiDBLite consensus disorder prediction 382 411 - -
Vvi3g1004 556 SUPERFAMILY beta-beta-alpha zinc fingers 453 488 IPR036236 -
Vvi3g1004 556 SMART c2h2final6 422 446 IPR013087 -
Vvi3g1004 556 SMART c2h2final6 456 480 IPR013087 -
Vvi3g1004 556 SMART c2h2final6 288 312 IPR013087 -
Vvi3g1004 556 SMART c2h2final6 490 514 IPR013087 -
Vvi3g1004 556 SUPERFAMILY beta-beta-alpha zinc fingers 489 519 IPR036236 -
Vvi3g1004 556 MobiDBLite consensus disorder prediction 321 339 - -
Vvi3g1004 556 PANTHER OS06G0651300 PROTEIN-RELATED 181 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1004 Vvi-Chr3 11341077 11346309 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1004 - - vvi:100247569 1077.39