Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1003 ATGATTTTGTGCGGGAGTCCTCATCCTGTTTTCGATAGAAAAACATCCATCGTGAGTAAGTACATTAGTGAATTGGATGATTGCGAGAAGCTATTTATTCCAATGCATGACGAATGCCCTGGTCATTGGTATTTGTGCGTCATTGACTTCAAAAACTCTTATACCCAAATTTTGGACTCATTACGATCGAAGAATCGAGACAAGTTCCGGTTTCAGAGTGTCAAAACAGTGGCTGAATTTTGTCAAACGTTCTTCAAACTGTATGACATAGGGAAAGATGTCTTCCAATTCTCCATTGATTGGGCTCCTTCGATTCCGACCCAAGAGAATGGGTGGGACTGTGGAGTGCATGTCATTAGACATATGCAGAGATTCAAAAATGGTGATCCGATGACGAGCTCCGACTTTTGTAATTCTATGGAAATACGTCGAGAAATAGCATGTGATTTAGTTTTACACAAGGGAAATAGAGAAAAACAAACCATTGTGGCTATTGTTTGTACAAAGACGTCGACACGAGCAATGAAAAAATTATTATTATGA 543 0.3923 MILCGSPHPVFDRKTSIVSKYISELDDCEKLFIPMHDECPGHWYLCVIDFKNSYTQILDSLRSKNRDKFRFQSVKTVAEFCQTFFKLYDIGKDVFQFSIDWAPSIPTQENGWDCGVHVIRHMQRFKNGDPMTSSDFCNSMEIRREIACDLVLHKGNREKQTIVAIVCTKTSTRAMKKLLL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1003 180 Gene3D Adenoviral Proteinase; Chain A 11 154 - -
Vvi3g1003 180 ProSiteProfiles Ubiquitin-like protease family profile. 1 125 IPR003653 GO:0006508|GO:0008234
Vvi3g1003 180 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 20 128 - -
Vvi3g1003 180 SUPERFAMILY Cysteine proteinases 19 152 IPR038765 -
Vvi3g1003 180 Pfam Ulp1 protease family, C-terminal catalytic domain 25 135 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1003 Vvi-Chr3 11335813 11336655 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1003 - - vvi:104878148 366.311