Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g1000 ATGGCGGTGGCCTCCGGTTCCGCCGCCTCTTTTGCAGCCTTCAAGTCTGGTCTCCGTTGCAATGCCTCCGTTTCTTATCCTCCCGGTCGGATCTCCGTCAGGCCAGGGAAAACAGCCGGATTGGGGGCGGTTAGGTGTAGCGTTGGTTCTGATGATTTGGCCAAGGCGGAATTGAGGGCGTCGAGTGTTTCAGCTCTTGAATTGCTCAAAACTTCGGCTGCTGACAGATATACGAAAGAGAGGAGCAGTATTATTGTCATAGGGCTTAGTTTTCATACAGCACCAGTTGAGGTACGCGAGAAACTTGCCATTCCAGAAGCAAACTGGCCACAGGCCATTGTTGAGCTCTGTGCTTTGAACCATATAGAAGAAGCCGCTGTCCTTAGCACTTGTAACAGAATGGAAATATATGTCGTGGCTCTCTCTCAGCATCGTGGGGTTAAAGAAGTGACGGAATGGATGTCAAAGACAAGTGGGGTTTCTGTATCAGAGATTTGTCAGCACCGTTTCACATTATACAATGAAGATGCGACACGGCATTTATTTGAAGTATCATCTGGGCTTGATTCTCTTGTTTTAGGAGAAGGTCAAATCCTTGCCCAGGTAAGACAAGTTGTAAAAACTGGACAAGGAGTCCCTGGATTTGATAGGAAGATCAGTGGGTTGTTCAAGCATGCAATCACTGTTGGGAAGAGGGTTAGAACTGAAACCAATATTTCTGCTGGGTCAGTTTCCGTCAGTTCAGCTGCAGTAGAGCTTGCCCTATTAAAGCTTGCAGAATCTTCCTATGCTACTGTCAGGCCATTGGTGATTGGAGCAGGCAAGATGGGTAAACTTGTCATCAAACACTTGGTTGCAAAAGGGTCCACTAAAATCGTAGTTGTGAACAGAAGCGAGGAGAGAGTTGCTGCGATCCGCAAGGAGCTTAAGGATGTTGAGATCATCTACAAACCCCTCTCAGAAATGCTAGCATGCACTGCCGAGGCTGATGTGGTTTTCACCAGCACGGCCTCAGAAAACTCACTGTTCTTGAAAGAGCATGTTGAGGCACTTCCCCCTGTGAGCCAGGAAATTGGAGGCTTGAGACTCTTCATAGATATCTCTGTTCCCAGGAATGTGGGACCGTGCGTCTCTGATCTTGAGACTGTACGTGTTTACAATGTGGATGATCTTAAGGAAGTAGTAGCAGCAAATAAGGAGGATCGCCTTCGGAAAGCAATGGAAGCTCAGGGGATTATTGCAGAGGAATTGAAACAATTCAAATCTTGGAAGGACTCGTTAGAGACTGTTCCAACCATCAAGAAACTCAGGGCTTATGCTGAAAGAATTAGAGCTTCTGAGCTGGACAAATGTTTGTCAAAGATGGGTGATGGTATCTCAAAGAAACAAAAGGCAGCTCTTTATGATCTTAGCATGGGCATAGTGAACAAGCTTCTACATGGTCCAATCCAACACCTGAGATGCGATGAGAACGAAAACCGGACTCTAAACGAGACACTCGAGAATATGCATGCCCTTAACAGAATTTTTGACCTTGAGACAGATACATCTTTGTTAGAAGAGAAGATTCGAGCCAAGGTGAAGCAGTCCCAGCCCTAA 1599 0.464 MAVASGSAASFAAFKSGLRCNASVSYPPGRISVRPGKTAGLGAVRCSVGSDDLAKAELRASSVSALELLKTSAADRYTKERSSIIVIGLSFHTAPVEVREKLAIPEANWPQAIVELCALNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGVSVSEICQHRFTLYNEDATRHLFEVSSGLDSLVLGEGQILAQVRQVVKTGQGVPGFDRKISGLFKHAITVGKRVRTETNISAGSVSVSSAAVELALLKLAESSYATVRPLVIGAGKMGKLVIKHLVAKGSTKIVVVNRSEERVAAIRKELKDVEIIYKPLSEMLACTAEADVVFTSTASENSLFLKEHVEALPPVSQEIGGLRLFIDISVPRNVGPCVSDLETVRVYNVDDLKEVVAANKEDRLRKAMEAQGIIAEELKQFKSWKDSLETVPTIKKLRAYAERIRASELDKCLSKMGDGISKKQKAALYDLSMGIVNKLLHGPIQHLRCDENENRTLNETLENMHALNRIFDLETDTSLLEEKIRAKVKQSQP* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g1000 532 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 406 495 IPR036453 GO:0008883|GO:0033014|GO:0050661
Vvi3g1000 532 CDD NAD_bind_Glutamyl_tRNA_reduct 84 406 - -
Vvi3g1000 532 Coils Coil 295 315 - -
Vvi3g1000 532 FunFam Glutamyl-tRNA reductase 242 401 - -
Vvi3g1000 532 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 242 402 IPR036291 -
Vvi3g1000 532 NCBIfam glutamyl-tRNA reductase 84 495 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vvi3g1000 532 Gene3D - 243 395 - -
Vvi3g1000 532 Pfam Shikimate / quinate 5-dehydrogenase 262 394 IPR006151 -
Vvi3g1000 532 ProSitePatterns Glutamyl-tRNA reductase signature. 180 203 IPR018214 GO:0008883
Vvi3g1000 532 Hamap Glutamyl-tRNA reductase [hemA]. 83 510 IPR000343 GO:0008883|GO:0033014|GO:0050661
Vvi3g1000 532 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 32 526 - -
Vvi3g1000 532 FunFam Glutamyl-tRNA reductase 83 242 - -
Vvi3g1000 532 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 87 237 IPR015895 GO:0008883|GO:0033014|GO:0050661
Vvi3g1000 532 Gene3D - 82 242 IPR036343 GO:0008883|GO:0033014|GO:0050661
Vvi3g1000 532 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 408 512 IPR015896 GO:0008883|GO:0033014|GO:0050661
Vvi3g1000 532 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 83 239 IPR036343 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g1000 Vvi-Chr3 11292233 11296705 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g1000 K02492 - vvi:100264583 981.474