Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0996 ATGATTGTAGAGGATCTTGGAATTGAAGCCAAGGAAGCGGCAGTTCGTGAGGTTGCCAAACTTTTGCCACTACCTGAACTTTTGCAGTCAATTTCATCAATTAAGGCTGATTACATTACACGCCAACAGGCAAATGATGCACAACTTAGTACGATGGTTGCAGAGCAGGTTGAACAGGCACAGGCTGGGTTGGAATCAATTTCCTCATCTCAAAAGACAATAAACCAGCTTCGTGAGAACTTTCTCTCTATTGAGAGGCTATGTCAAGAGTGCCAAAACTTAATTGAAAATCATGACCAAATAAAGCTCCTTAGCAATGTGAGGAATAACTTAAATACCACACTGAAGGACGTGGAAGGCATGATGTCAATTTCTGTTGAAGCATCCGAGGCTCGGGATTCTTTGAGTGATGATAAAGAACTCATCAACACGTATGAGAGGTTGACAGCTCTGGATGGAAAACGGAGGTTTGCTTTAGCAGCTGCAGCATCTCACAAGGAAGAAGTTGGCAGACTGAGGGAATATTTTGAAGATGTAGATCGAACCTGGGAGACATTTGAGAAGACGTTATGGGGTCATATTTCAAACTTCTATAAACTTTCTAAAGAAAGTCCACAAACTCTGGTTCGTGCTTTGAGGGTTGTTGAAATGCAAGAAATCCTTGATCAACAACTTGCTGAGGAAGCAGCCGAGGCTGAGGGAGGAGGGACCATGGCATCAATTGCAAATCCTCGTAGAACTGCAAAAAAATCTACAACTGCAACAGCTTCTTCGAGGAACTTGACACAACAGAAGTTGAAGATCCAAGGGAAAGACTATAAGGATAAGTGTTATGAGCAAATAAGGAAGACAGTTGAGCAAAGGTTTAATAAGCTTTTGACAGAGCTTGTTTTTGAGGATCTAAAAGCTGCTTTGGAGGAAGCTAGAATGATTGGAGAAGAGCTTGGAGATATTTATGACTATGTGGCTCCTTGTTTTCCCCCAAGATATGAAATATTCCAACTGATGGTAAATCTTTATACTGAGAGGTTCATTCAGATGCTCAGGCTGCTCAGTGACCGAGCAAATCAACTGACAAATATAGAGATTTTAAAGGTAACTGGTTGGGTTGTTGAATACCAAGATAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTTTGTTCTGAGAGTGGTGCTATGGATCCTCTCATGAATTCATATGTTGAAAGAATGCAAGCCACAACAAAGAAATGGTATTTAAATATCCTGGAGGCTGATAAAGTACAACCGCCAAAGAAAACAGAAGATGGAAAGCTATATACACCAGCTGCTGTTGACTTATTTAGGATCCTAGGAGAGCAGGTGCAAATTGTTCGGGAGAATAGCACTGATGTCATGCTATACAGAATTGCTTTGGCTGTCATTCAGGTAATGATTGATTTTCAAGCAGCTGAAAAGCGAAGACTTGAAGAACCTGCTTCTGAAATTGGTCTGGAATCTTTATGTGCAATGATTAACAACAATCTACGCTGCTATGATCTAGCATTGGAGCTGAGTAGCAGCACCTTGGAAGCTCTTCCACAGAATTATGCTGAGCAGGTTAATTTTGAAGACACTTGCAAAGGTTTCCTGGAGGTTGCAAAGGAAGCTGTGCATCAAACTGTGAGTGTTATATTTGAAGACCCAGGAGTTCAAGAGTTACTTGTCAAGCTGTACCAGAAAGAGTGGTGCGAAGGACAGGTTACAGAGTACTTGGTTGCAACATTTGGTGATTATTTTATGGATGTGAAGATGTACATTGAAGAAAGATCATTTAGGAGATTTGTTGAAGCTTGCCTGGAAGAAACTGTGGTTGTTTATGTTGATCACCTCCTGACACAGAGAAACTATATAAAGGAAGAAACCATTGAACGGATGAGGCTAGATGAAGAGGTTATCTTGGATTTCTTTAGGGAGTACATAAGTGTCTCCAAAGTTGAAAACAGAGTCAGGATACTGAGTGACTTGAGAGAGCTTGCTTCCGCAGAGAGCCTGGATACTTTCACACTCATCTACACAAACATTCTTGAACATCAACCCGATTGTCCATCTGAGGTGGTTGAGAAACTAGTTGGACTGCGAGAAGGCATACCACGGAAGGATGCAAAGGAGGTTGTCCAAGAGTGCAAAGAAATCTACGAAAATTCCCTTGTTGGCGGTAACCCCCCAAAGGCAGGTTTTGTTTTCCCAAAGGTGAAGTGTCTTACAGCTTCCAAGGGATCGTTATGGCGGAAGCTGACTTGA 2271 0.4161 MIVEDLGIEAKEAAVREVAKLLPLPELLQSISSIKADYITRQQANDAQLSTMVAEQVEQAQAGLESISSSQKTINQLRENFLSIERLCQECQNLIENHDQIKLLSNVRNNLNTTLKDVEGMMSISVEASEARDSLSDDKELINTYERLTALDGKRRFALAAAASHKEEVGRLREYFEDVDRTWETFEKTLWGHISNFYKLSKESPQTLVRALRVVEMQEILDQQLAEEAAEAEGGGTMASIANPRRTAKKSTTATASSRNLTQQKLKIQGKDYKDKCYEQIRKTVEQRFNKLLTELVFEDLKAALEEARMIGEELGDIYDYVAPCFPPRYEIFQLMVNLYTERFIQMLRLLSDRANQLTNIEILKVTGWVVEYQDNLIGLGVDDSLAQVCSESGAMDPLMNSYVERMQATTKKWYLNILEADKVQPPKKTEDGKLYTPAAVDLFRILGEQVQIVRENSTDVMLYRIALAVIQVMIDFQAAEKRRLEEPASEIGLESLCAMINNNLRCYDLALELSSSTLEALPQNYAEQVNFEDTCKGFLEVAKEAVHQTVSVIFEDPGVQELLVKLYQKEWCEGQVTEYLVATFGDYFMDVKMYIEERSFRRFVEACLEETVVVYVDHLLTQRNYIKEETIERMRLDEEVILDFFREYISVSKVENRVRILSDLRELASAESLDTFTLIYTNILEHQPDCPSEVVEKLVGLREGIPRKDAKEVVQECKEIYENSLVGGNPPKAGFVFPKVKCLTASKGSLWRKLT* 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0996 756 PANTHER EXOCYST COMPLEX COMPONENT SEC6-RELATED 3 743 IPR010326 GO:0000145|GO:0006887
Vvi3g0996 756 Coils Coil 84 104 - -
Vvi3g0996 756 Pfam Exocyst complex component Sec6 176 736 IPR010326 GO:0000145|GO:0006887
Vvi3g0996 756 FunFam Exocyst complex component SEC6 568 741 - -
Vvi3g0996 756 MobiDBLite consensus disorder prediction 231 261 - -
Vvi3g0996 756 Gene3D - 393 562 - -
Vvi3g0996 756 Gene3D - 568 730 IPR042532 -
Vvi3g0996 756 FunFam Exocyst complex component SEC6 393 562 - -
Vvi3g0996 756 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0996 Vvi-Chr3 11194241 11237796 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0996 K06110 - vvi:100247582 1426.77