Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0995 ATGGAGTTGAGTAACATCAAAGATGCATTTGATCGTGTTGCCAAGAAGCAAAAATTATCATCATCCAAATCCCAAGAAGTAATTGACCAAGTTGGCCGTGAAATTGAAGATGCACTGGCAAAACTCCAGGCTGACCCTGCCTCTCCTGTGGATCAGAAATCCATCCTCATGGAGCTTAAAACCAAACTTAGCATAATTGGCTCACAAAGCCAGTTGGAAGGGTCACAGAAGGAGCTCAACATGAACCTTAGCAAGTACCCCAGACTCCTTGAGAAATCCTTCAATCCTGACATATCTAAGGCATACAGAAATGTTGACTTTGATTTCCATACAGTGAATCAGATCATTGCAAGCCATTTTTACCGACAAGGATTGTTTGATATTGGGGAGTGCTTGATAAATGAGGCTGGAGAACCAGAGGACACCGCCCTAAAATCTCAATTTCTGGAAATGTTTCAAATACTTGATGCTATGAAAGCTAGGGACCTCGAGCCTGCTCTGAACTGGGTGTCCAATAATCGGGAAAAACTAAAGCAGAATGGTTCAAATCTTGAGCTGAAGCTTCACAGGCTGCAGTTTGTGGAAATTTTGCAGAAAGGAGGGCGAGCTGATGCACTCAACTACGCTAGAACTTACCTTGCTCCTTTTGCATCACTTCACATGGATGAGATCCAGAAGCTTATGGCTTGCCTCTTATGGGTAGGAAGGCTTGACAGCTCCCCATATTCCGAGTTAATGGTTCCATCCCTTTGGGAGAAATTGGCTGAGGAGCTGACCCGCCAATTCTGCAGTCTCTTGGGGCAGTCTTATGAGAGTCCATTGAGTGTGGCAATAGCTGCTGGGATTGAAGGCTTGCCTACTCTCTTGAAGCTGGCAAATGTAATGGCTGCAAAGAAGCAGGAGTGGCAGGCAATGAAACAGTTGCCAGTACCAGTGGATTTGGGTAGGGAATTCCAGTTCCACTCTATATTCGTCTGCCCAGTGAGTAGAGATCAAGGCAGTGAAGAGAACCCACCTATGCTGATGCCGTGCGGCCATGTTCTCTGTAAGCAATCAATCATGAAGCTGTCCAAGAGCAGCACCCGCATGTTTAAGTGTCCATACTGTCCGAATGAGTCTACTGTTGGGCAGTGCATGCAACTCTACTTCTGA 1152 0.4583 MELSNIKDAFDRVAKKQKLSSSKSQEVIDQVGREIEDALAKLQADPASPVDQKSILMELKTKLSIIGSQSQLEGSQKELNMNLSKYPRLLEKSFNPDISKAYRNVDFDFHTVNQIIASHFYRQGLFDIGECLINEAGEPEDTALKSQFLEMFQILDAMKARDLEPALNWVSNNREKLKQNGSNLELKLHRLQFVEILQKGGRADALNYARTYLAPFASLHMDEIQKLMACLLWVGRLDSSPYSELMVPSLWEKLAEELTRQFCSLLGQSYESPLSVAIAAGIEGLPTLLKLANVMAAKKQEWQAMKQLPVPVDLGREFQFHSIFVCPVSRDQGSEENPPMLMPCGHVLCKQSIMKLSKSSTRMFKCPYCPNESTVGQCMQLYF* 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0995 383 CDD dRING_Rmd5p-like 324 372 IPR037683 -
Vvi3g0995 383 SMART toby_final6 200 294 IPR013144 -
Vvi3g0995 383 Pfam RING-type zinc-finger 326 367 IPR027370 -
Vvi3g0995 383 ProSiteProfiles Gid-type RING finger profile. 326 369 IPR044063 GO:0061630
Vvi3g0995 383 Pfam CTLH/CRA C-terminal to LisH motif domain 147 288 IPR024964 -
Vvi3g0995 383 SUPERFAMILY RING/U-box 320 378 - -
Vvi3g0995 383 ProSiteProfiles Zinc finger RING-type profile. 326 369 IPR001841 -
Vvi3g0995 383 SMART ctlh 147 204 IPR006595 -
Vvi3g0995 383 PANTHER MACROPHAGE ERYTHROBLAST ATTACHER-RELATED 2 382 IPR045098 GO:0004842|GO:0043161
Vvi3g0995 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 317 382 IPR013083 -
Vvi3g0995 383 FunFam Regulator of gluconeogenesis Rmd5 318 382 - -
Vvi3g0995 383 SMART ring_2 326 369 IPR001841 -
Vvi3g0995 383 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 147 204 IPR006595 -
Vvi3g0995 383 ProSiteProfiles LIS1 homology (LisH) motif profile. 110 140 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0995 Vvi-Chr3 11175987 11177138 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0995 K23333 - vvi:100252683 758.444