Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0988 ATGGCATCCGCCGTCTTAGCGAGTCGCAATGAATCGAATTGGGCGCAGTCGAGAGGCGGCGGCGGCGGCGGAGGCGGAGGAGGATTCATGGGAAAATTCCATTCTTCAAACCCTAACCCTAACAATTCGAAGCGGAAAACCCACGCGCCGGCAGGTGATATCAACGATTTATCGCCTGCTGTGACGCAATCGGCATCGGATGACGCTTCTTCCTTCAATCAGAGATCGATTGTTGAGTTCAATCGGGGTAGATACGTGACCTTCAACATCGGCTCGTATTCGAGAAAAGATTTGGTGCAACTCAAGAATCGGTTGGTATCGGAACTCGAGAAGATCCAGAATCTGAGTAATCGGATCGAGTCCGGCGATTTGCAGCTCAGATCTGGCGGCGATCGGACAGCAAACAAGCAGCAGCGGCCGAATAACAAGAAGATAGCGGGAAACAAACGGCCTCCGCCTTTTGATTCCGGAAGAGGTCCAAAGCGATCGGCAGCGGAGAACGCGAGCTTGATGAAGCTGTGCGGACAAACGTTGACGAAGCTGATGAAGCACAAGCACAGTTGGGTGTTCAATTCGCCTGTTGATGTTGTTGGCATGGGGCTTCACGATTACCACCAGATTATTAAAAGGCCGATGGATCTTGGCACCGTAAAATCGAAGATCGCGAAGAATCTCTATGATTCGCCCCTTGATTTCGCCGCGGATGTCAGATTGACATTCGACAATGCTCTGTTGTATAACCCTAAGGGCCACGATGTTCACGTCATGGCCGAGCAGTTGCTGGCTAGGTTTGAGGATTTGTTCAAACCAGTGTACAATAAGCTAGAAGAAGATGAGAGGGATCAGGAAAGAATCATCGTTGGTGAATTGCAGGGGAGTTCTTGGAACCATATTCCGACCCCAGAGAGGTTGAAGAAGCCAAGTCCGAAGCCTGTTGCGAAAAAACCTGAGAGAATGCAGGTACCTATACCCGCCACTGGGTCCTCAAACCCACCTTCGGTTCAGTCGGTGCCAACGCCATCGCCTATGCGAGCCCCACCAGTGAAGCCATTGGCCACAAGGCCAAGCAGTGGGAAGCAACCGAAGCCCAAGGCCAAGGATCCTAACAAAAGAGAGATGAGCTTAGAGGAGAAGCATAAATTGGGTCTTGGGTTGCAGAGTTTGCCTCAGGAGAAGATGGACCAGGTTGTGCAGATTATAAGCAAGAAAAATGGCCATTTAACGCAAGATGGCGATGAAATTGAGCTTGATATCGAGGCTGTTGATACCGAGACTCTTTGGGAGCTTGATAGATTAGTGACTAATTGGAAGAAAATGGTGAGCAAGATCAAGCGGCAAGCCCTTATGGTCAACAACAACACGGCTGCCACAGAAGTAAATAGGTCTTCTATGAATGAGAGAACTGAACCTTCTCTGGCTCCGGCCATGGCAAAGAAGCCAAAGAAAGGAGAGGCTGGGGAGGAAGATGTCGACATTGGTGATGAAATACCAACAGCCACCTTCCCACCAGTTGAAATTGAGAAGGATGATGCCCGGGCCAGCAGTAGTTCTAGCAGTTCGAGTAGTTCAAGCAGTGATTCCTCCTCATCGAGTGATTCGGATTCGGGGAGTTCCTCTGGGAGTGATTCGGATGTGGACAATGCTCAATCTAGACCTTGA 1659 0.5009 MASAVLASRNESNWAQSRGGGGGGGGGGFMGKFHSSNPNPNNSKRKTHAPAGDINDLSPAVTQSASDDASSFNQRSIVEFNRGRYVTFNIGSYSRKDLVQLKNRLVSELEKIQNLSNRIESGDLQLRSGGDRTANKQQRPNNKKIAGNKRPPPFDSGRGPKRSAAENASLMKLCGQTLTKLMKHKHSWVFNSPVDVVGMGLHDYHQIIKRPMDLGTVKSKIAKNLYDSPLDFAADVRLTFDNALLYNPKGHDVHVMAEQLLARFEDLFKPVYNKLEEDERDQERIIVGELQGSSWNHIPTPERLKKPSPKPVAKKPERMQVPIPATGSSNPPSVQSVPTPSPMRAPPVKPLATRPSSGKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPQEKMDQVVQIISKKNGHLTQDGDEIELDIEAVDTETLWELDRLVTNWKKMVSKIKRQALMVNNNTAATEVNRSSMNERTEPSLAPAMAKKPKKGEAGEEDVDIGDEIPTATFPPVEIEKDDARASSSSSSSSSSSSDSSSSSDSDSGSSSGSDSDVDNAQSRP* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0988 552 MobiDBLite consensus disorder prediction 335 349 - -
Vvi3g0988 552 CDD Bromo_plant1 170 265 IPR037377 -
Vvi3g0988 552 Pfam Bromodomain extra-terminal - transcription regulation 372 434 IPR027353 -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 123 162 - -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 1 17 - -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 513 552 - -
Vvi3g0988 552 Gene3D - 130 286 IPR036427 GO:0005515
Vvi3g0988 552 SUPERFAMILY Bromodomain 163 279 IPR036427 GO:0005515
Vvi3g0988 552 MobiDBLite consensus disorder prediction 454 469 - -
Vvi3g0988 552 PRINTS Bromodomain signature 185 198 IPR001487 GO:0005515
Vvi3g0988 552 PRINTS Bromodomain signature 235 254 IPR001487 GO:0005515
Vvi3g0988 552 PRINTS Bromodomain signature 217 235 IPR001487 GO:0005515
Vvi3g0988 552 PRINTS Bromodomain signature 201 217 IPR001487 GO:0005515
Vvi3g0988 552 MobiDBLite consensus disorder prediction 34 48 - -
Vvi3g0988 552 ProSiteProfiles NET domain profile. 363 444 IPR027353 -
Vvi3g0988 552 PANTHER OSJNBA0053K19.4 PROTEIN 78 543 - -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 57 72 - -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 454 552 - -
Vvi3g0988 552 ProSiteProfiles Bromodomain profile. 182 254 IPR001487 GO:0005515
Vvi3g0988 552 Coils Coil 95 118 - -
Vvi3g0988 552 Gene3D - 366 443 IPR038336 -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 296 375 - -
Vvi3g0988 552 Pfam Bromodomain 174 258 IPR001487 GO:0005515
Vvi3g0988 552 SMART bromo_6 163 273 IPR001487 GO:0005515
Vvi3g0988 552 MobiDBLite consensus disorder prediction 123 144 - -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 360 375 - -
Vvi3g0988 552 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0988 Vvi-Chr3 10961496 10963430 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0988 - - vvi:100245782 999.964