Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0984 ATGGCTGCCTCCGTTTTGCTCCGATCTCTACGTCGCCGTGAACTCGCTTCCCCTTCTCTCTCTGCTTACAGAGCCTTGACTGGAAATACAAAGTCATCATGGAATACATCTCCAACAGGTTGGGCAAGTTTGGCTAGGGCGTTCAGCTCAAAGCCTGCTGGTAATGATGTCATTGGAATTGACTTGGGTACCACCAACTCGTGTGTTGCAGTTATGGAGGGAAAGAATCCCAAAGTTATTGAGAATTCTGAAGGATCTCGGACTACACCATCAGTGGTTGCCTTCAATCAGAAGGGAGAGCTACTTGTAGGTACTCCAGCAAAACGTCAGGCTGTGACAAACCCGACAAATACTGTTTTTGGGACCAAGCGTCTTATCGGCAGACGCTTTGATGATCCCCAGACACAAAAAGAAATGAAGATGGTTCCATATAAGATAGTTAGGGCTCCCAATGGAGATGCATGGGTTGAAGCTAATGGACAGCAATATTCTCCAAGCCAAATTGGGGCCTTTATTCTTACAAAGATGAAAGAAACTGCAGAGTCTTATCTTGGGAAGTCAGTCTCAAAAGCAGTGATCACTGTGCCAGCTTATTTCAATGATGCTCAGAGACAAGCAACAAAGGATGCCGGACGTATTTCTGGACTTGATGTGCAGAGAATCATTAATGAGCCCACTGCTGCAGCACTCTCCTATGGTTTAAACAATAAGGAGGGTCTTATAGCAGTTTTTGATCTTGGGGGTGGAACATTTGATGTTTCTATTCTGGAGATCTCTAATGGTGTTTTTGAGGTGAAAGCAACAAATGGTGATACGTTCTTGGGAGGAGAGGATTTTGACAATACTCTTTTGGAGTTTTTGGTGAGTGAGTTCAAGAGAACTGAGGGAATTGATCTTTCAAAGGATAGGCTTGCCCTGCAGAGACTCCGGGAAGCAGCTGAGAAAGCCAAGATAGAACTCTCATCAACATCTCAGACTGAAATCAACCTGCCATTTATCACAGCTGATGCATCAGGTGCAAAACATCTGAACATAACTCTCACCAGATCAAAATTTGAGAGTTTGGTGAACCACTTGATTGAGAGGACCAGGGGCCCATGTAAGAGCTGTCTGAAGGACGCAGGAATATCCACCAAGGAGGTGGATGAAGTTCTTCTTGTAGGTGGGATGACTCGGGTTCCTAAAGTACAAGAAGTGGTGTCTGAGATCTTTGGAAAGAGCCCCAGCAAAGGAGTAAATCCTGATGAGGCTGTTGCCATGGGTGCTGCTATTCAGGGAGGCATTCTTCGTGGAGATGTGAAAGAGTTGCTTCTCTTGGATGTCACTCCCCTATCCCTTGGTATAGAGACACTGGGTGGCATCTTCACCAGGCTGATCAACAGGAACACAACAATTCCCACTAAGAAGAGTCAGGTGTTCTCAACAGCAGCTGACAATCAAACTCAGGTTGGTATCAAGGTACTGCAAGGTGAGCGAGAGATGGCATCTGATAACAAGCTCCTTGGTGAGTTTGAGCTTATGGGCATCCCACCAGCTCCCAGAGGCATGCCTCAGATCGAAGTCACATTTGATATTGACGCTAATGGAATTGTCACTGTGTCTGCCAAAGACAAGGCCACAGGGAAGGAACAACAAATCACGATCCGCTCATCTGGTGGCCTTTCAGAAGATGAGATTGAGAAGATGGTTAAGGAAGCCGAGTTGCATGCCCAGAAAGATCAGGAGAGAAAAGCTCTGATAGATATCAGAAACAGTGCAGACACCACCATCTACAGTGTAGAAAAAAGCTTGGGTGAATACAGGGACAAGATCCCAAGTGAGGTTGCAACTGAGATCGAGTCAGCAGTTGCTGATTTGAGGAAGGCAATGTCAGGTGATAACATTGAAGAAATCAAGGCAAAGCTTGATGCTGCAAACAAGGCCGTATCAAAGATTGGACAGCACATGGCAGGAGGTTCTGGTGGTGGTTCGACCCCTGGAGGAGGTTCTCAGGGTGGTGATCAGGCTCCCGAGGCAGAATATGAAGAGGTGAAGAAGTAG 2040 0.4632 MAASVLLRSLRRRELASPSLSAYRALTGNTKSSWNTSPTGWASLARAFSSKPAGNDVIGIDLGTTNSCVAVMEGKNPKVIENSEGSRTTPSVVAFNQKGELLVGTPAKRQAVTNPTNTVFGTKRLIGRRFDDPQTQKEMKMVPYKIVRAPNGDAWVEANGQQYSPSQIGAFILTKMKETAESYLGKSVSKAVITVPAYFNDAQRQATKDAGRISGLDVQRIINEPTAAALSYGLNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDTFLGGEDFDNTLLEFLVSEFKRTEGIDLSKDRLALQRLREAAEKAKIELSSTSQTEINLPFITADASGAKHLNITLTRSKFESLVNHLIERTRGPCKSCLKDAGISTKEVDEVLLVGGMTRVPKVQEVVSEIFGKSPSKGVNPDEAVAMGAAIQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVLQGEREMASDNKLLGEFELMGIPPAPRGMPQIEVTFDIDANGIVTVSAKDKATGKEQQITIRSSGGLSEDEIEKMVKEAELHAQKDQERKALIDIRNSADTTIYSVEKSLGEYRDKIPSEVATEIESAVADLRKAMSGDNIEEIKAKLDAANKAVSKIGQHMAGGSGGGSTPGGGSQGGDQAPEAEYEEVKK* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0984 679 ProSitePatterns Heat shock hsp70 proteins family signature 2. 243 256 IPR018181 -
Vvi3g0984 679 CDD HSPA9-like_NBD 54 429 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 249 259 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 56 69 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 435 454 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 381 397 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 84 96 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 516 532 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 107 115 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 191 211 - -
Vvi3g0984 679 PRINTS 70kDa heat shock protein signature 412 432 - -
Vvi3g0984 679 FunFam Chaperone protein HscA homolog 240 294 - -
Vvi3g0984 679 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 429 553 IPR029047 -
Vvi3g0984 679 FunFam Molecular chaperone DnaK 276 363 - -
Vvi3g0984 679 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 581 656 IPR029048 -
Vvi3g0984 679 MobiDBLite consensus disorder prediction 646 679 - -
Vvi3g0984 679 Gene3D Actin; Chain A, domain 4 276 363 - -
Vvi3g0984 679 Gene3D - 58 426 - -
Vvi3g0984 679 ProSitePatterns Heat shock hsp70 proteins family signature 3. 384 398 IPR018181 -
Vvi3g0984 679 Pfam Hsp70 protein 57 649 IPR013126 GO:0005524|GO:0140662
Vvi3g0984 679 SUPERFAMILY Actin-like ATPase domain 57 237 IPR043129 -
Vvi3g0984 679 FunFam Molecular chaperone DnaK 58 239 - -
Vvi3g0984 679 PANTHER HEAT SHOCK PROTEIN 70KDA 57 607 IPR013126 GO:0005524|GO:0140662
Vvi3g0984 679 FunFam Chaperone protein DnaK HSP70 425 608 - -
Vvi3g0984 679 Gene3D - 233 413 - -
Vvi3g0984 679 FunFam Molecular chaperone DnaK 554 653 - -
Vvi3g0984 679 Gene3D - 554 651 IPR029048 -
Vvi3g0984 679 Coils Coil 299 326 - -
Vvi3g0984 679 Hamap Chaperone protein DnaK [dnaK]. 54 677 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi3g0984 679 SUPERFAMILY Actin-like ATPase domain 238 429 IPR043129 -
Vvi3g0984 679 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 431 587 IPR029047 -
Vvi3g0984 679 NCBIfam molecular chaperone DnaK 57 649 IPR012725 GO:0005524|GO:0006457|GO:0051082
Vvi3g0984 679 ProSitePatterns Heat shock hsp70 proteins family signature 1. 60 67 IPR018181 -
Vvi3g0984 679 FunFam Heat shock protein 9 120 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0984 Vvi-Chr3 10899900 10904577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0984 57 661 Miscellaneous Gene Families AT5G42020 51.757 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0984 K04043 - vvi:100250929 1277.69