Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0942 ATGGCTTCTCCCGAGATCGAAGTCGACTCAGACTCCAAAACTCCGAAAAACGAAGCCCACATCTTCGACGTTTTCTCCGCTTGTGCCTACGGAGATTTCCCAAAACTGCGGAAATTTGTAGAAGAAAACTGCGCTTCTCTCTCAAAGCCTGATGGAAATGGGTACTATGCTCTTCATTGGGCTTCTCTCAATAATTTCCCCGATATCGTGCAGTACGTCATCGAGCATGGCGGTGATGTGAATGCGGTCGATAATTCACAGCAGACGGCTTTGCATTGGTCTGCGGTTCGGGGTGCGGTTTCGGTGGCGGACATCCTTTTACAGAATGGAGCTCGGGTGGAGGCGGCTGATATTAATGGGTATCGGGCAGTTCATGTTGCTGCTCAATATGGACAAACAGCTTTCATAAATCACCTTGTTGCAAAGTACCATGCAGATTTTGATGCACCGGATAGAGATGGGAGAAGTCCTCTTCATTGGGCTGCCTATAAAGGATTTGCAGATACGATTCGATTACTTCTTTTTAGAGATGCATGCCAAGGGAGAACGGATAAAGAAGGTTGTACTCCTCTACACTGGGCGGCATTAAGAGGAAATGTGGAGGCATGTGCGGTGCTTGTACATGCAGGCACAAAGCAGGAACTAATGGTGAAAGACAATGCTGGATTTACTCCTGTTGAGCTTGCATCTGATAAAGGTCATCGGCATGTTGCCTCTTTCCTTTCTAATATTCAGCGAGCACACAGCAAACGTTGGAGAGACAAAGTTTGCAGTGGGAAAACAGGGAATAGTAGTTGTGCTCCTGTTCTATTTTGCATTGCAATAATTGTTATTATCCTCTTCATCAACACAGTTCTTGTAGCTCCTAATCTTACGAAGGTTACTGCTGTTGTTGGACTCTGGGGATGGATTTGTGTTTCTCTCGCTGTATGTTCATTGATAATGCTCTATAGATGTAGTAGTAAAGATCCGGGTTATATAAAAAAATCTGGTGGTTTGGGTAATCACACAGATGCAGAGGATCCACTGTTGAATATCAATCTCAACAATTCCTCCATATGGACGGGAAATTGGTCTCAACTTTGCCCCACTTGCAAGATAATTAGACCTGTTCGCTCAAAGCACTGCCCTACATGTAAGCGCTGTGTGGAACAATTTGACCACCACTGCCCTTGGATTTCAAATTGTGTAGGGAAGAAGAACAAATGGGACTTCTTTGTTTTTATCTGCCTGGGAGCTTTGTCCACATTCATTGGTGCTATTGTTGCAGTTCAAAGAATTTGGACAGCATTGCCAACATTGCGGGCAGAAGAAACTTGGATTCAATATGTGGTGGTTCAACATTCTGGTGTTGTTGCCTTTCTGGTTATGGACATAATTCTTTTGATGGCTAGTGTAACTTTGACAACGGCACAATCATCCCAGATAGCTCGGAATATCACCACTAATGAGTTGGCGAATTTCATCCGCTATGGGTATCTTCATGCTCCAGATGGGCGGTTCCGAAATCCATACAACCATGGGTGTCGAAAGAACTGTGCAGATTTTCTCATTTATGGCTACACTGATGATGAGGAAATAGCTTGGCCTCCATTACAGCAGGTTTCCACATAG 1614 0.4449 MASPEIEVDSDSKTPKNEAHIFDVFSACAYGDFPKLRKFVEENCASLSKPDGNGYYALHWASLNNFPDIVQYVIEHGGDVNAVDNSQQTALHWSAVRGAVSVADILLQNGARVEAADINGYRAVHVAAQYGQTAFINHLVAKYHADFDAPDRDGRSPLHWAAYKGFADTIRLLLFRDACQGRTDKEGCTPLHWAALRGNVEACAVLVHAGTKQELMVKDNAGFTPVELASDKGHRHVASFLSNIQRAHSKRWRDKVCSGKTGNSSCAPVLFCIAIIVIILFINTVLVAPNLTKVTAVVGLWGWICVSLAVCSLIMLYRCSSKDPGYIKKSGGLGNHTDAEDPLLNINLNNSSIWTGNWSQLCPTCKIIRPVRSKHCPTCKRCVEQFDHHCPWISNCVGKKNKWDFFVFICLGALSTFIGAIVAVQRIWTALPTLRAEETWIQYVVVQHSGVVAFLVMDIILLMASVTLTTAQSSQIARNITTNELANFIRYGYLHAPDGRFRNPYNHGCRKNCADFLIYGYTDDEEIAWPPLQQVST* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat region circular profile. 53 85 - -
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat region circular profile. 153 174 - -
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat profile. 53 85 IPR002110 GO:0005515
Vvi3g0942 537 PANTHER ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED 18 518 - -
Vvi3g0942 537 Pfam Ankyrin repeats (3 copies) 27 116 IPR002110 GO:0005515
Vvi3g0942 537 Pfam Ankyrin repeats (3 copies) 184 242 IPR002110 GO:0005515
Vvi3g0942 537 Pfam Ankyrin repeats (3 copies) 117 178 IPR002110 GO:0005515
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat region circular profile. 186 210 - -
Vvi3g0942 537 Pfam DHHC palmitoyltransferase 360 486 IPR001594 GO:0016409
Vvi3g0942 537 SMART ANK_2a 221 250 IPR002110 GO:0005515
Vvi3g0942 537 SMART ANK_2a 119 149 IPR002110 GO:0005515
Vvi3g0942 537 SMART ANK_2a 186 215 IPR002110 GO:0005515
Vvi3g0942 537 SMART ANK_2a 153 182 IPR002110 GO:0005515
Vvi3g0942 537 SMART ANK_2a 53 82 IPR002110 GO:0005515
Vvi3g0942 537 SMART ANK_2a 86 115 IPR002110 GO:0005515
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat region circular profile. 86 117 - -
Vvi3g0942 537 Gene3D - 18 140 IPR036770 -
Vvi3g0942 537 FunFam S-acyltransferase 140 248 - -
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat profile. 86 118 IPR002110 GO:0005515
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat profile. 186 218 IPR002110 GO:0005515
Vvi3g0942 537 SUPERFAMILY Ankyrin repeat 24 243 IPR036770 -
Vvi3g0942 537 Gene3D - 141 248 IPR036770 -
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat profile. 119 152 IPR002110 GO:0005515
Vvi3g0942 537 FunFam S-acyltransferase 9 139 - -
Vvi3g0942 537 ProSiteProfiles Ankyrin repeat profile. 153 185 IPR002110 GO:0005515
Vvi3g0942 537 ProSiteProfiles DHHC domain profile. 360 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0942 Vvi-Chr3 9553734 9614183 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0942 24 241 Miscellaneous Gene Families AT5G60070 27.313 5.56e-15 75.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0942 K20032 - vvi:100241204 1108.59