Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0936 ATGCAGCCCACTGCAGAGGCTAATCAGCGCATTGCAAGGCTCTCAGCTCACCTCTACCCTTCAGTTCGCCAGATGGAGGAGAGTTCGGTATTGAGGCGGGCGAATTGCAGAGCGAAAGGTGGAGCGCCAGGATTCAAAGTAGCTATACTGGGTGCTGCAGGAGGCATTGGGCAGCCACTTGCAATGCTGATGAAGATGAATCCACTTGTGTCAGTTCTCCATCTCTATGATGTTGTCAATGCCCCTGGTGTCACTGCTGATATCAGTCATATGGACACTGGTGCTGTGGTGAGGGGCTTTTTAGGGCAACCACAGCTTGAGAGTGCTCTTACAGGCATGGACCTGGTCATTATTCCTGCTGGTGTTCCAAGAAAGCCAGGAATGACAAGGGATGATCTTTTCAACATCAATGCTGGGATTGTCAGGACTCTTTGTGAAGGGATTGCAAAGTGCTGCCCCAATGCGATTGTCAACTTGATCAGTAACCCAGTGAACTCCACAGTTCCTATTGCAGCTGAGGTTTTCAAGAAAGCCGGCACTTACGATCCAAAGCGACTCCTGGGAGTCACAATGCTTGATGTTGTGAGGGCCAACACCTTTGTGGCTGAGGTTTTGGGACTTGATCCTAGGGAAGTTGATGTCCCAGTTGTTGGAGGTCATTCTGGGGTGACAATTTTGCCTCTTCTATCACAGGTTAAGCCTCCTTGTTCCTTCACCCCAGAAGAAACTCAGTACCTGACAAATCGCATTCAGAATGGTGGAACAGAAGTTGTTGAGGCAAAAGCTGGGGCCGGCTCTGCAACACTGTCCATGGCATATGCAGCAGTTAAATTTGCAGATGCATGCCTTAGGGGCCTGAGAGGAGATGCTGGGGTCGTGGAATGCACTTTTGTAGCTTCTCAGGTGACAGAACTTCCATTCTTTGCAACCAAGGTACGACTAGGCCGCAGTGGAGCAGAGGAGATCTACCAACTTGGACCTCTGAATGAGTATGAGAGGGTTGGGTTGGAGAAAGCAAAGAAGGAGCTGGCCGGGAGCATTGCGAAGGGAATTTCCTTTATCAGGAAATGA 1071 0.4995 MQPTAEANQRIARLSAHLYPSVRQMEESSVLRRANCRAKGGAPGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQPQLESALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYDPKRLLGVTMLDVVRANTFVAEVLGLDPREVDVPVVGGHSGVTILPLLSQVKPPCSFTPEETQYLTNRIQNGGTEVVEAKAGAGSATLSMAYAAVKFADACLRGLRGDAGVVECTFVASQVTELPFFATKVRLGRSGAEEIYQLGPLNEYERVGLEKAKKELAGSIAKGISFIRK* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0936 356 FunFam Malate dehydrogenase 190 356 - -
Vvi3g0936 356 ProSitePatterns Malate dehydrogenase active site signature. 189 201 IPR001252 GO:0006108|GO:0016615
Vvi3g0936 356 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 188 IPR036291 -
Vvi3g0936 356 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 190 353 IPR022383 GO:0016616
Vvi3g0936 356 SUPERFAMILY LDH C-terminal domain-like 189 354 IPR015955 GO:0003824|GO:0016616
Vvi3g0936 356 NCBIfam malate dehydrogenase 46 355 IPR010097 GO:0006099|GO:0030060
Vvi3g0936 356 PANTHER MALATE AND LACTATE DEHYDROGENASE 24 355 - -
Vvi3g0936 356 FunFam Malate dehydrogenase 43 189 - -
Vvi3g0936 356 Gene3D - 190 356 IPR015955 GO:0003824|GO:0016616
Vvi3g0936 356 Pfam lactate/malate dehydrogenase, NAD binding domain 46 188 IPR001236 GO:0016491
Vvi3g0936 356 Gene3D - 37 189 - -
Vvi3g0936 356 CDD MDH_glyoxysomal_mitochondrial 45 354 IPR010097 GO:0006099|GO:0030060
Vvi3g0936 356 PIRSF Lac_mal_DH 44 352 IPR001557 GO:0016616|GO:0019752
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0936 Vvi-Chr3 9452354 9454831 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0936 K00026 - vvi:100232924 699.123