Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0931 ATGGTTTATTCATATGTTGTGGGAGGAATCATGGCTTCTCTGTTTGGGCTTGTTGTGTTGTACAATTCAAGAAAAAAGAGGACGAACAGGGGAGCTTTGATGGGGAGAATGAGGGATGAATGTCCTAAGACCTCTGGAAATGGAGGATGCAGTCAGGAGATCACAGAATGTAGTGATGTGATTATTGTTGGTGCTGGAGTTGCTGGGTCTGCTCTTGCTTACGCTCTTGGCAAGGATGGACGCCGAGTACATGTGATTGAAAGGGACCTCTCTGAGCCTGATAGAATTGTGGGAGAACTGCTTCAACCTGGTGGCTATCTGAAATTAGTTGATTTGGGTCTAGAAGATTGTGTCAAAGGGATTGATGCCCAGAAAGTGTTTGGATATGCACTTTACAAAGATGGGAAACACACTCAACTGTCGTATCCCTTGGAGCATTTTCATCCTGATGTGGCTGGGAGAGGCTTTCATTATGGGCGTTTCATTCAGAGCCTGAGAGCAAAAGCGGCTTCTATTTCTAGTGTAAGATTGGAACAAGGAACAGTAACATCCCTGATTGAACAAGATGGGACTATCAAAGGGGTGCAGTACAAGAACAAAGCTGGTGAAGTACTAACTGCATATGCCCCGTTTACGATTGTATGCGATGGTTGTTTTTCAAATTTGCGCCAATCTCTCTGCAATCCCAAGGTGGCTGTGCCCTCATCTTTTGTTGGTTTGGTCCTGGAAAACAGCCCCCTTCCATACACCAACCACGGACATGTTATCTTGGCAGATCCTTCGCCTGTCCTGTTTTATCCCATCAGTAGTTATGAGATCCGTTGTTTGGTGGATGTCCCTGGCCAAAAGGTGCCCTCCATATCCAGTGGAGAAATGGCTCACTATTTGAAAACTGCAGTGGCTCCCCAGATCCCCCCTGAGCTTTATAGTGCCTTCATATCTGCAATCAACAAAGGAAACATTAAAACAATGCCAAATAGAAGCATGCCTGCATCACCCCTTCCAACCCCAGGAGCACTTTTACTTGGGGATGCGTTCAACATGCGACATCCTTTAACAGGAGGTGGAATGACCGTGGCCCTATCTGATGTTGTCGTACTAAGGGATCTCTTCAGGCCATTGCAGGATCTGAATGATGCAGCTGCTGTGTGCAAGTATCTTGAAGCCTTCTATACTCTAAGGAAGCCGGTGGCATCTACAATAAATACATTGGCAGGAGCTTTATACAAGGTGTTTTGTGCATCACCTGACCAAGCAAGGAAGGAAATGCGCCAAGCATGTTTTGACTATTTGAGCCTGGGAGGTGTCTTTTCCAATGGACCTGTGTCTCTGCTCTCTGGTCTAAACCCTCGCCCACTGATCTTGGTTCTCCATTTCTTCGCTGTAGCAGTTTATGGCGTTGGCCGCTTACAGCTTCCATTCCCTTCACCTAAACGGATGTGGCTTGGGGTTAGGCTGATTTCGGTGCGTATATTAAGATTTTGA 1485 0.4633 MVYSYVVGGIMASLFGLVVLYNSRKKRTNRGALMGRMRDECPKTSGNGGCSQEITECSDVIIVGAGVAGSALAYALGKDGRRVHVIERDLSEPDRIVGELLQPGGYLKLVDLGLEDCVKGIDAQKVFGYALYKDGKHTQLSYPLEHFHPDVAGRGFHYGRFIQSLRAKAASISSVRLEQGTVTSLIEQDGTIKGVQYKNKAGEVLTAYAPFTIVCDGCFSNLRQSLCNPKVAVPSSFVGLVLENSPLPYTNHGHVILADPSPVLFYPISSYEIRCLVDVPGQKVPSISSGEMAHYLKTAVAPQIPPELYSAFISAINKGNIKTMPNRSMPASPLPTPGALLLGDAFNMRHPLTGGGMTVALSDVVVLRDLFRPLQDLNDAAAVCKYLEAFYTLRKPVASTINTLAGALYKVFCASPDQARKEMRQACFDYLSLGGVFSNGPVSLLSGLNPRPLILVLHFFAVAVYGVGRLQLPFPSPKRMWLGVRLISVRILRF* 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0931 494 SUPERFAMILY FAD/NAD(P)-binding domain 59 433 IPR036188 -
Vvi3g0931 494 FunFam Squalene monooxygenase 2 52 432 - -
Vvi3g0931 494 Gene3D - 52 439 IPR036188 -
Vvi3g0931 494 PANTHER SQUALENE MONOOXYGENASE 7 489 IPR040125 GO:0004506|GO:0016126
Vvi3g0931 494 Pfam NAD(P)-binding Rossmann-like domain 62 88 - -
Vvi3g0931 494 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 351 367 - -
Vvi3g0931 494 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 336 351 - -
Vvi3g0931 494 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 208 223 - -
Vvi3g0931 494 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 59 81 - -
Vvi3g0931 494 Pfam Squalene epoxidase 209 480 IPR013698 GO:0004506|GO:0016020|GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0931 Vvi-Chr3 9386059 9388788 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0931 44 488 Miscellaneous Gene Families AT1G58440 75.281 0.0 709
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0931 K00511 - vvi:100260031 979.163