Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0930 ATGTATTCATTTTTAAGCATAACTACTGATTTTGGCATTTTGAACATTTCAAAATTTCTGCCACTGCTTAGAAGACATTACCAATTATTTTCAGCAGCCACAAGTTCTCCGCATTTCTCATCATATGGCCTTGAAAACCAGAATGAAGAGATTGATTTCAATAGTTTATTTGATTCATGCACCAAAACCCTCCTTGCAAAGCGCCTTCATGCCCTTCTTGTGGTGTCAGGAAAAATCCAAAGCAATTTTATCTCAATTCGTCTCGTCAATCTTTATGCTAGCCTTGGTGATGTATCCTTGTCCCGTGGCACCTTTGATCAGATCCAACGCAAGGATGTCTATACCTGGAACTCGATGATATCTGCTTATGTTCGCAATGGCCATTTCCGTGAAGCTATAGATTGTTTCTATCAGCTGTTATTGGTGACCAAGTTTCAAGCTGATTTCTACACTTTTCCTCCAGTTTTGAAAGCTTGTCAAACTCTAGTCGATGGGAGGAAGATACACTGCTGGGTTTTCAAACTGGGTTTTCAATGGGATGTATTTGTGGCTGCTTCCTTGATCCATATGTATTCTCGGTTTGGTTTTGTAGGTATTGCCCGAAGCCTGTTTGATGATATGCCATTTCGAGATATGGGTTCTTGGAATGCAATGATTTCTGGGCTTATTCAAAATGGAAATGCTGCACAGGCATTGGATGTCTTGGATGAAATGAGATTGGAGGGAATAAACATGGATTCAGTTACAGTTGCAAGCATTCTTCCTGTCTGTGCACAGTTGGGGGATATTTCAACCGCAACACTAATCCATTTGTATGTCATAAAACATGGTTTAGAGTTTGAATTATTTGTGTCTAATGCCTTGATTAACATGTATGCTAAATTTGGTAACTTGGGGGATGCACAGAAAGTTTTTCAACAAATGTTTTTAAGGGATGTGGTGTCGTGGAACTCAATAATTGCTGCCTATGAGCAGAATGATGATCCAGTTACTGCACGTGGGTTCTTTTTCAAGATGCAGCTAAATGGACTTGAGCCTGATTTATTAACACTAGTGAGTTTAGCTTCTATTGCTGCTCAGTCTAGGGATTATAAAAATAGCAGGTCTGTTCATGGATTCATCATGAGAAGGGGTTGGCTTATGGAAGCTGTTGTCATTGGAAATGCAGTTATGGACATGTATGCAAAGTTGGGTGTTATAGATTCTGCACATAAAGTTTTCAACCTAATCCCAGTTAAAGATGTGGTTTCATGGAACACTTTGATCTCAGGTTATACTCAGAATGGTCTTGCAAGTGAGGCAATTGAAGTATATAGAATGATGGAGGAGTGCAGGGAGATTAAACTTAATCAAGGGACTTGGGTAAGCATTCTAGCAGCTTATGCCCATGTTGGGGCCTTGCAACAAGGGATGAGAATTCATGGGCACTTAATTAAGACCAATCTCCACTTGGATGTTTTTGTGGGTACCTGCCTCATTGACTTGTATGGAAAATGTGGTAGATTAGTGGATGCAATGTGCTTATTCTATCAAGTGCCCCGGGAGAGTTCTGTCCCTTGGAATGCCATAATATCCTGTCATGGAATCCATGGACATGGTGAGAAAGCTCTAAAGCTATTTAGAGAAATGCAAGATGAGGGGGTTAAGCCTGATCATGTGACATTTATATCATTATTGTCAGCTTGTAGCCATTCCGGTTTAGTTGATGAGGGTAAATGGTTCTTTCATCTGATGCAGGAGTATGGGATTAAACCTAGTTTGAAGCACTATGGGTGCATGGTAGACTTGCTGGGTCGAGCTGGTTTTCTGGAAATGGCATATGATTTTATAAAAGATATGCCTTTACACCCTGATGCTTCCATCTGGGGTGCCCTTCTTGGTGCTTGTAGGATACATGGAAATATTGAGTTGGGCAAATTTGCTTCAGATCGTTTATTTGAAGTTGATTCAGAAAATGTTGGATATTATGTTCTGTTGTCAAATATTTATGCTAATGTTGGGAAATGGGAGGGAGTGGATAAAGTGAGATCTCTGGCTAGAGAGAGGGGATTGAAGAAAACTCCTGGGTGGAGCTCAATTGAAGTGAACCGCAGGGTTGATATCTTTTACACCGGGAACCAATCCCATCCTAAATGTAAGGAGATATACGCGGAGTTGCGAATTTTGACTGCCAAAATGAAGAGTCTTGGTTATATTCCAGACTATAGCTTTGTGTTGCAGGATGTTGAGGAGGATGAAAAGGAGCATATCCTCACTAGTCATAGCGAGAGATTAGCTATTGCATTTGGAATCATTAGCACCCCTCCTAAAAGTGCTATTCGGATCTTCAAGAACTTGCGGGTTTGTGGGGATTGCCACAATGCAACCAAATTCATTTCAAGGATTACCGAGAGGGAGATTGTGGTGAGGGATTCAAAACGCTTCCATCACTTTAAGAATGGAATATGTTCTTGCGGAGACTACTGGTAA 2469 0.4066 MYSFLSITTDFGILNISKFLPLLRRHYQLFSAATSSPHFSSYGLENQNEEIDFNSLFDSCTKTLLAKRLHALLVVSGKIQSNFISIRLVNLYASLGDVSLSRGTFDQIQRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQTLVDGRKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHGLEFELFVSNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGLEPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAHKVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHVGALQQGMRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNAIISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQEYGIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFASDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVNRRVDIFYTGNQSHPKCKEIYAELRILTAKMKSLGYIPDYSFVLQDVEEDEKEHILTSHSERLAIAFGIISTPPKSAIRIFKNLRVCGDCHNATKFISRITEREIVVRDSKRFHHFKNGICSCGDYW* 823
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0930 822 FunFam Pentatricopeptide repeat-containing protein At4g14850 267 365 - -
Vvi3g0930 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Vvi3g0930 822 Gene3D Tetratricopeptide repeat domain 382 481 IPR011990 GO:0005515
Vvi3g0930 822 FunFam Pentatricopeptide repeat-containing protein At4g33990 169 266 - -
Vvi3g0930 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Vvi3g0930 822 Pfam DYW family of nucleic acid deaminases 730 822 IPR032867 GO:0008270
Vvi3g0930 822 Pfam E motif 632 694 IPR046848 -
Vvi3g0930 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 444 IPR002885 -
Vvi3g0930 822 FunFam Pentatricopeptide repeat-containing protein chloroplastic 366 468 - -
Vvi3g0930 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Vvi3g0930 822 FunFam Pentatricopeptide repeat-containing protein chloroplastic 490 720 - -
Vvi3g0930 822 Pfam PPR repeat family 517 563 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat family 413 462 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat family 212 256 IPR002885 -
Vvi3g0930 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 211 245 IPR002885 -
Vvi3g0930 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 112 147 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat 314 344 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat 286 309 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat 186 208 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat 590 613 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat 114 138 IPR002885 -
Vvi3g0930 822 Pfam PPR repeat 490 512 IPR002885 -
Vvi3g0930 822 NCBIfam pentatricopeptide repeat 114 139 IPR002885 -
Vvi3g0930 822 NCBIfam pentatricopeptide repeat 520 551 IPR002885 -
Vvi3g0930 822 NCBIfam pentatricopeptide repeat 553 586 IPR002885 -
Vvi3g0930 822 NCBIfam pentatricopeptide repeat 214 246 IPR002885 -
Vvi3g0930 822 NCBIfam pentatricopeptide repeat 314 347 IPR002885 -
Vvi3g0930 822 NCBIfam pentatricopeptide repeat 416 444 IPR002885 -
Vvi3g0930 822 FunFam Pentatricopeptide repeat-containing protein At2g03380, mitochondrial 42 168 - -
Vvi3g0930 822 Gene3D Tetratricopeptide repeat domain 266 381 IPR011990 GO:0005515
Vvi3g0930 822 Gene3D Tetratricopeptide repeat domain 516 724 IPR011990 GO:0005515
Vvi3g0930 822 Gene3D Tetratricopeptide repeat domain 46 164 IPR011990 GO:0005515
Vvi3g0930 822 Gene3D Tetratricopeptide repeat domain 165 265 IPR011990 GO:0005515
Vvi3g0930 822 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 446 759 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0930 Vvi-Chr3 9373663 9376239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0930 49 822 Glycoside Hydrolase AT3G49170 36.478 2.35e-165 499
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0930 - - vvi:100254933 1640.55